halophFGD

Basic Information

Locus ID: Ag6G01573

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Protein kinase domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	86472357	86475167	+	Ag6G01573

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.52	32,862.74 Da	46.04	88.59	-0.42

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	126	183	7.38E-8	IPR011009
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	126	199	3.0E-11	-
MobiDBLite	mobidb-lite	consensus disorder prediction	283	298	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	245	265	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	245	298	-	-

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G01540.2	Protein kinase superfamily protein.
RefSeq	XP_017236737.1	PREDICTED: probable serine/threonine-protein kinase At1g01540 [Daucus carota subsp. sativus]
Swiss-Prot	Q3EDL4	Probable serine/threonine-protein kinase At1g01540 OS=Arabidopsis thaliana OX=3702 GN=At1g01540 PE=1 SV=2
TrEMBL	A0A166E538	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006943 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	8.087281	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	5.953451	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	5.629693	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	8.229774	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	7.314672	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	6.972154	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	6.254093	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	3.806364	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	29.936855	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	32.243279	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	32.76947	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	29.355705	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	27.693434	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	25.049522	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	36.094017	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	35.910267	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	34.530487	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	35.149181	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	32.971634	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	33.594254	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	27.045721	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	41.274696	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	41.86808	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	40.657452	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	41.986794	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	34.891888	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	32.046871	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	31.672735	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	37.547657	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	5.24414		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	7.655858		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	8.583431		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	20.203417		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	17.71665		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	21.340237		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	13.155991		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	9.963184		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	11.434939		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	38.584404	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	25.994724	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	18.359476	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	2.997361	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	26.789173	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	29.181162	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	19.768358	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	4.172168	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	21.55464	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	23.340446	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	22.649424	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	25.25032	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	8	jg10687, jg11614, jg22763, jg26212, jg26882, jg28758 ... jg29623, jg30298
Aizoaceae	Mesembryanthemum crystallinum	2	gene_16688, gene_23595
Amaranthaceae	Atriplex hortensis	4	Ah010245, Ah022955, Ah027441, Ah036871
Amaranthaceae	Beta vulgaris	3	BVRB_1g004150, BVRB_1g015860, BVRB_9g217520
Amaranthaceae	Salicornia bigelovii	8	Sbi_jg12450, Sbi_jg13035, Sbi_jg39435, Sbi_jg4559 ... Sbi_jg45866, Sbi_jg49276, Sbi_jg52840, Sbi_jg54906
Amaranthaceae	Salicornia europaea	4	Seu_jg14899, Seu_jg20223, Seu_jg5966, Seu_jg9033
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00000488, GOSA_00010214, GOSA_00013934, GOSA_00022441
Amaranthaceae	Suaeda glauca	11	Sgl11031, Sgl11032, Sgl14835, Sgl16439, Sgl18376, Sgl33928 ... Sgl39296, Sgl39315, Sgl56085, Sgl61418, Sgl61653
Amaranthaceae	Chenopodium album	12	gene:ENSEOMG00000002394, gene:ENSEOMG00000015149 ... gene:ENSEOMG00000019988, gene:ENSEOMG00000020102, gene:ENSEOMG00000025388, gene:ENSEOMG00000033799, gene:ENSEOMG00000033821, gene:ENSEOMG00000034836, gene:ENSEOMG00000037255, gene:ENSEOMG00000049118, gene:ENSEOMG00000049488, gene:ENSEOMG00000052377
Amaranthaceae	Chenopodium quinoa	7	CQ.Regalona.r1.1AG0003290, CQ.Regalona.r1.1AG0017550 ... CQ.Regalona.r1.2BG0025280, CQ.Regalona.r1.6AG0025130, CQ.Regalona.r1.6BG0026630, CQ.Regalona.r1.7BG0007720, CQ.Regalona.r1.9AG0016790
Anacardiaceae	Pistacia vera	5	pistato.v30004880, pistato.v30045030, pistato.v30114240 ... pistato.v30206200, pistato.v30209010
Apiaceae	Apium graveolens	4	Ag1G00928, Ag3G00151, Ag5G00288, Ag6G01573
Arecaceae	Cocos nucifera	6	COCNU_02G010600, COCNU_05G001250, COCNU_07G007920 ... COCNU_10G005910, COCNU_13G005120, scaffold052756G000010
Arecaceae	Phoenix dactylifera	9	gene-LOC103701248, gene-LOC103703190, gene-LOC103704241 ... gene-LOC103704378, gene-LOC103707648, gene-LOC103718485, gene-LOC103721621, gene-LOC120107194, gene-LOC120107509
Asparagaceae	Asparagus officinalis	5	AsparagusV1_01.1627.V1.1, AsparagusV1_04.2518.V1.1 ... AsparagusV1_08.1669.V1.1, AsparagusV1_09.1108.V1.1, AsparagusV1_10.251.V1.1
Asteraceae	Flaveria trinervia	6	Ftri10G01867, Ftri13G33362, Ftri15G06585, Ftri15G13230 ... Ftri18G08227, Ftri4G07752
Brassicaceae	Arabidopsis thaliana	4	AT1G01540.2, AT4G01330.2, AT4G02630.1, AT4G34500.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10007528m.g.v1.0, Thhalv10025223m.g.v1.0 ... Thhalv10028599m.g.v1.0, Thhalv10028635m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g00780.v2.2, Sp6g00810.v2.2, Sp6g02540.v2.2 ... Sp7g32290.v2.2
Brassicaceae	Brassica nigra	6	BniB02g000430.2N, BniB03g037020.2N, BniB05g003800.2N ... BniB05g058020.2N, BniB08g042990.2N, BniB08g045290.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq02G0978, Ceq03G1821, Ceq05G1327, Ceq09G0100
Casuarinaceae	Casuarina glauca	3	Cgl02G1028, Cgl05G1331, Cgl09G0117
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno05g00490, gene.Cymno08g07810, gene.Cymno15g04890
Hydrocharitaceae	Thalassia testudinum	5	gene.Thate06g11310, gene.Thate06g11570, gene.Thate06g14310 ... gene.Thate08g05890, gene.Thate08g09470
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-1256, nbisL1-mrna-9513
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG02.2118, evm.TU.LG04.810, evm.TU.LG04.813 ... evm.TU.LG06.413, evm.TU.LG08.130
Plantaginaceae	Plantago ovata	2	Pov_00007527, Pov_00027591
Plumbaginaceae	Limonium bicolor	9	Lb1G06284, Lb1G06291, Lb2G11118, Lb2G11149, Lb2G11156 ... Lb2G13463, Lb2G13468, Lb3G20824, Lb4G21937
Poaceae	Echinochloa crus-galli	19	AH01.3101, AH01.4433, AH01.5143, AH05.2309, AH07.2147 ... AH09.1009, BH01.3452, BH01.5066, BH01.5282, BH05.2416, BH07.2105, BH09.1081, CH01.3687, CH01.5037, CH05.2507, CH05.4303, CH07.2012, CH09.1214, Contig192.69
Poaceae	Eleusine coracana subsp. coracana	12	gene-QOZ80_2AG0114800, gene-QOZ80_2AG0133450 ... gene-QOZ80_2BG0168570, gene-QOZ80_2BG0189010, gene-QOZ80_3AG0231900, gene-QOZ80_3AG0239860, gene-QOZ80_3BG0288170, gene-QOZ80_3BG0296050, gene-QOZ80_4AG0317550, gene-QOZ80_4BG0348950, gene-QOZ80_5AG0371960, gene-QOZ80_5BG0419360
Poaceae	Hordeum vulgare	6	HORVU.MOREX.r3.1HG0052100.1, HORVU.MOREX.r3.1HG0075750.1 ... HORVU.MOREX.r3.2HG0121760.1, HORVU.MOREX.r3.2HG0168350.1, HORVU.MOREX.r3.4HG0394330.1, HORVU.MOREX.r3.4HG0411170.1
Poaceae	Lolium multiflorum	7	gene-QYE76_012264, gene-QYE76_014628, gene-QYE76_022803 ... gene-QYE76_022858, gene-QYE76_069552, gene-QYE76_069585, gene-QYE76_071263
Poaceae	Oryza coarctata	11	Oco03G012150, Oco04G014170, Oco05G001520, Oco05G007090 ... Oco06G001470, Oco06G007340, Oco07G005890, Oco08G005890, Oco09G010550, Oco10G010560, Oco19G008770
Poaceae	Oryza sativa	6	LOC_Os02g34430.1, LOC_Os03g03410.1, LOC_Os03g12680.1 ... LOC_Os04g35080.1, LOC_Os05g36050.1, LOC_Os10g38920.1
Poaceae	Paspalum vaginatum	6	gene-BS78_01G304000, gene-BS78_01G428600 ... gene-BS78_01G498400, gene-BS78_04G157900, gene-BS78_06G095500, gene-BS78_09G156900
Poaceae	Puccinellia tenuiflora	8	Pt_Chr0100559, Pt_Chr0100602, Pt_Chr0101900, Pt_Chr0302688 ... Pt_Chr0302728, Pt_Chr0503063, Pt_Chr0504920, Pt_Chr0504928
Poaceae	Sporobolus alterniflorus	18	Chr01G019820, Chr01G028600, Chr01G038500, Chr04G005770 ... Chr06G010170, Chr07G005820, Chr09G003480, Chr09G014680, Chr12G000910, Chr12G010850, Chr12G018200, Chr13G010680, Chr13G021420, Chr15G011650, Chr23G013030, Chr25G011320, Chr26G006520, Chr30G010900
Poaceae	Thinopyrum elongatum	6	Tel1E01G330800, Tel1E01G444100, Tel2E01G307800 ... Tel2E01G534200, Tel4E01G405000, Tel4E01G525900
Poaceae	Triticum dicoccoides	11	gene_TRIDC1AG028040, gene_TRIDC1AG040490 ... gene_TRIDC1BG032270, gene_TRIDC2AG019380, gene_TRIDC2AG043890, gene_TRIDC2BG023220, gene_TRIDC2BG046570, gene_TRIDC4AG009510, gene_TRIDC4BG041240, gene_TRIDC4BG053680, gene_TRIDC5AG070280
Poaceae	Triticum aestivum	18	TraesCS1A02G185100.1, TraesCS1A02G272100.1 ... TraesCS1B02G193000.1, TraesCS1B02G282100.1, TraesCS1D02G191800.1, TraesCS1D02G272800.1, TraesCS2A02G154300.1, TraesCS2A02G302500.1, TraesCS2B02G179500.1, TraesCS2B02G318400.1, TraesCS2D02G159800.1, TraesCS2D02G301200.1, TraesCS4A02G078100.1, TraesCS4B02G234200.1, TraesCS4B02G318400.1, TraesCS4D02G235400.1, TraesCS4D02G314800.1, TraesCS5A02G493800.1
Poaceae	Zea mays	8	Zm00001eb001880_P001, Zm00001eb009660_P002 ... Zm00001eb021840_P001, Zm00001eb082860_P001, Zm00001eb243350_P001, Zm00001eb348580_P001, Zm00001eb399310_P001, Zm00001eb403680_P001
Poaceae	Zoysia japonica	9	nbis-gene-14023, nbis-gene-18847, nbis-gene-20765 ... nbis-gene-24006, nbis-gene-26005, nbis-gene-3083, nbis-gene-37862, nbis-gene-4672, nbis-gene-7671
Poaceae	Zoysia macrostachya	11	Zma_g13670, Zma_g15578, Zma_g16448, Zma_g1716, Zma_g19698 ... Zma_g21282, Zma_g2187, Zma_g27137, Zma_g28311, Zma_g4088, Zma_g4536
Portulacaceae	Portulaca oleracea	8	evm.TU.LG02.374, evm.TU.LG04.2241, evm.TU.LG06.64 ... evm.TU.LG09.1614, evm.TU.LG10.1087, evm.TU.LG17.1091, evm.TU.LG19.1223, evm.TU.LG24.1224
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g01490, gene.Posoc05g20380, gene.Posoc07g06880
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_2_RagTag.221, evm.TU.Scaffold_7_RagTag.746 ... evm.TU.Scaffold_8_RagTag.973, evm.TU.Scaffold_9_RagTag.534
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-10816, nbisL1-mrna-19185, nbisL1-mrna-8889
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-17846, nbisL1-mrna-18733, nbisL1-mrna-20070 ... nbisL1-mrna-7631
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-20680, nbisL1-mrna-6603, nbisL1-mrna-7346
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000002l.599, evm.TU.utg000003l.249 ... evm.TU.utg000009l.822, evm.TU.utg000018l.312
Rhizophoraceae	Kandelia obovata	4	Maker00003069, Maker00005093, Maker00010839, Maker00017565
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-11413, nbisL1-mrna-14746, nbisL1-mrna-1747 ... nbisL1-mrna-8257
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-10011, nbisL1-mrna-19615, nbisL1-mrna-23846
Salicaceae	Populus euphratica	6	populus_peu08880, populus_peu14399, populus_peu23381 ... populus_peu27652, populus_peu36470, populus_peu38200
Solanaceae	Lycium barbarum	4	gene-LOC132599168, gene-LOC132604091, gene-LOC132627842 ... gene-LOC132645548
Solanaceae	Solanum chilense	3	SOLCI001073500, SOLCI004019800, SOLCI007407600
Solanaceae	Solanum pennellii	4	gene-LOC107007510, gene-LOC107008121, gene-LOC107008566 ... gene-LOC107017829
Tamaricaceae	Reaumuria soongarica	4	STRG.30929_chr11_-, gene_2784, gene_766, gene_7826
Tamaricaceae	Tamarix chinensis	5	TC03G2207, TC10G0476, TC10G2188, TC10G2189, TC11G0255
Zosteraceae	Zostera marina	2	Zosma04g14800.v3.1, Zosma06g02670.v3.1