Basic Information
Locus ID:
Ag6G01565
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Glycosyl transferases group 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 85426265 | 85434804 | - | Ag6G01565 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.62 | 118,872.40 Da | 41.64 | 83.71 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00534 | Glycosyl transferases group 1 | 392 | 488 | 3.5E-6 | IPR001296 |
| SUPERFAMILY | SSF53756 | UDP-Glycosyltransferase/glycogen phosphorylase | 150 | 488 | 1.81E-14 | - |
| Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 306 | 501 | 6.6E-11 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 976 | 1009 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 976 | 998 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G01210.1 | glycosyl transferase family 1 protein. | 0 |
| RefSeq | XP_017235559.1 | PREDICTED: uncharacterized protein LOC108209259 isoform X2 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A166E5G6 | Glycos_transf_1 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006957 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 11.476934 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 9.287606 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 12.032556 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 11.10834 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 11.621206 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 8.609501 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 8.012486 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 5.1858 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 42.332455 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 43.270191 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 48.625206 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 56.737423 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 56.336163 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 46.869965 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 44.77766 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 46.134014 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 36.281631 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 47.773796 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 37.442619 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 45.031723 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 42.461739 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 32.409885 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 33.024818 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 30.828798 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 31.492647 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 46.106598 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 40.143673 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 30.346189 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 44.204185 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.185813 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 9.548265 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 5.438601 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.725131 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 7.025772 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.015197 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.667487 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.632296 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.132821 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 28.833122 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 23.788843 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 11.4665 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 10.13084 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 19.607985 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 21.378994 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 23.999369 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 9.677635 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 39.354809 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 22.526844 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 22.691406 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 20.312309 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg1971, jg29608 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1671 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022918 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g003800 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4033, Sbi_jg49235 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6006 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000520 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl10996, Sgl16405 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014010, gene:ENSEOMG00000036069 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0003650, CQ.Regalona.r1.2BG0025590 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30005190 |
| Apiaceae | Apium graveolens | 1 | Ag6G01565 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G003450, COCNU_14G001920 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103708367, gene-LOC103716003 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1738.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri5G06273, Ftri7G00228 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G01210.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028385m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g00910.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB08g041460.2N, BniB08g043180.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1210 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1250 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno12g01990, gene.Cymno16g02230 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g17260, gene.Thate09g15410 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.775 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00039287 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G03584, Lb4G25409 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.2376, BH02.2485, CH02.2665 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0025080, gene-QOZ80_1BG0075630 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0273270.1 |
| Poaceae | Oryza coarctata | 1 | Oco02G015170 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g43380.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G199300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0603414, Pt_Chr0603434 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G015010, Chr03G011330, Chr08G011530 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G384300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG033640, gene_TRIDC3BG038180 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G224700.1, TraesCS3B02G254200.3 ... |
| Poaceae | Zea mays | 2 | Zm00001eb159550_P002, Zm00001eb358450_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-29214, nbis-gene-50536 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10678, Zma_g8246 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.2215, evm.TU.LG06.89, evm.TU.LG19.1245 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g08260 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.561 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21676 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6975 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7366 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.234 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017653 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1731 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19592 |
| Salicaceae | Populus euphratica | 2 | populus_peu27619, populus_peu31608 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645507 |
| Solanaceae | Solanum chilense | 1 | SOLCI004775700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107006478 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.28958_chr11_-, gene_15213 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2172 |
| Zosteraceae | Zostera marina | 2 | Zosma01g09490.v3.1, Zosma05g13790.v3.1 |