Basic Information
Locus ID:
Ag6G01564
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-box-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 85420763 | 85423736 | - | Ag6G01564 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.46 | 46,066.43 Da | 46.31 | 84.60 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 44 | 83 | 1.9E-10 | IPR001810 |
| SUPERFAMILY | SSF117281 | Kelch motif | 99 | 381 | 1.03E-6 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 42 | 143 | 3.14E-17 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 43 | 82 | 2.3E-10 | - |
| Gene3D | G3DSA:2.120.10.80 | - | 86 | 386 | 2.3E-7 | IPR015915 |
| SMART | SM00256 | fbox_2 | 44 | 84 | 3.2E-10 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 134 | 334 | 1.3E-11 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 44 | 85 | 12.067426 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61590.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_017231958.1 | PREDICTED: F-box/kelch-repeat protein At3g61590 [Daucus carota subsp. sativus] | 0 |
| Q9M310 | F-box/kelch-repeat protein At3g61590 OS=Arabidopsis thaliana OX=3702 GN=At3g61590 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B7C199 | F-box domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_044291 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 4.816923 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 4.571747 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 8.826941 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 7.352107 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 9.702628 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 6.171327 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 5.538858 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 3.82393 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 18.672497 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 20.458914 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 19.883743 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 19.244755 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 16.700594 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 13.365515 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 11.110773 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 8.037351 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 11.37324 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 10.061017 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 5.177325 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 10.721217 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 8.177702 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 20.617941 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 28.393236 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 16.781815 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 17.037457 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 7.778768 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 12.238804 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 8.099783 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 10.691403 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.31963 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.043187 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.187136 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 6.261869 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 7.118256 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 7.059911 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 4.348652 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.661899 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.541798 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 14.974663 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 8.965131 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.72208 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 3.246641 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 7.591089 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 11.609882 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 16.608435 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 2.878343 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 24.618746 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 17.661251 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 14.133494 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 14.017674 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg1976, jg29411, jg29604 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_1668, gene_1789 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah004521, Ah012550, Ah022914 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g003760, BVRB_5g099590 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg23963, Sbi_jg23964, Sbi_jg40679, Sbi_jg50684 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg12234, Seu_jg2239 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00000524, GOSA_00001106 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl10991, Sgl16401, Sgl52140, Sgl57413 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000004711, gene:ENSEOMG00000016016 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0003700, CQ.Regalona.r1.2BG0025630 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30005240 |
| Apiaceae | Apium graveolens | 3 | Ag6G00014, Ag6G01564, Ag8G00619 |
| Arecaceae | Cocos nucifera | 5 | COCNU_02G003740, COCNU_03G012580, COCNU_03G012590 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103708361, gene-LOC103710423, gene-LOC103710870 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2851.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G11034, Ftri13G30825, Ftri5G17491 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G61590.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005970m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g01820.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB06g053100.2N, BniB06g061920.2N, BniB08g075710.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1213 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1252 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno16g02180 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g17350, gene.Thate09g15360 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.769 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00016647 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G22048 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.1131, BH02.2701, CH07.989 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0027310, gene-QOZ80_1BG0077490 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0277120.1.CDS1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_022377, gene-QYE76_054329, gene-QYE76_054333 |
| Poaceae | Oryza coarctata | 4 | Oco01G016310, Oco02G016520, Oco03G007130, Oco04G007450 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g47050.1, LOC_Os02g15950.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_03G218100, gene-BS78_04G111500 ... |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G013760, Chr03G012160, Chr05G020010, Chr06G031900 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G407300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG035720, gene_TRIDC3BG040090 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G239100.1.cds1, TraesCS3B02G267600.1.cds1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb157830_P001, Zm00001eb203860_P002 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-34166, nbis-gene-50935, nbis-gene-9042 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g10800, Zma_g12549, Zma_g15381 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG04.2212, evm.TU.LG04.3312, evm.TU.LG06.92 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g08340 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_4_RagTag.843, evm.TU.Scaffold_5_RagTag.575 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-10771, nbisL1-mrna-10792, nbisL1-mrna-21683 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-17977, nbisL1-mrna-6096 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-10209, nbisL1-mrna-7367 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000003l.77, add.evm.TU.utg000006l.161 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00013321, Maker00017664 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17412, nbisL1-mrna-20789 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-19588, nbisL1-mrna-7229 |
| Salicaceae | Populus euphratica | 2 | populus_peu27612, populus_peu31603 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132640661, gene-LOC132645502 |
| Solanaceae | Solanum chilense | 2 | SOLCI003518500, SOLCI004008600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107014958, gene-LOC107019731 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.28955_chr11_-, STRG.8597_chr06_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G2170, TC09G2286 |
| Zosteraceae | Zostera marina | 3 | Zosma01g09520.v3.1, Zosma06g24210.v3.1, Zosma06g24300.v3.1 |