Basic Information
Locus ID:
Ag6G01501
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 77166208 | 77168672 | - | Ag6G01501 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.87 | 41,659.38 Da | 39.69 | 82.91 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26950.1 | 0 | |
| RefSeq | XP_017231655.1 | PREDICTED: uncharacterized protein LOC108206011 isoform X1 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A166EK71 | O-fucosyltransferase family protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_007509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 2.568996 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 2.15147 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.217879 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.476336 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 2.600561 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 2.302957 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.826324 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.462998 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 8.099763 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 8.692204 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 9.311661 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 6.037375 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 6.767336 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 6.649987 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.703596 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 3.77286 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 7.588262 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 5.887798 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 5.702829 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.00321 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 5.305606 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 9.80822 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 8.37791 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 8.4163 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 8.175089 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 5.223333 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 6.507121 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 5.095184 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 6.239968 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.423228 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.140079 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.587708 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.873944 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.696681 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 2.363267 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.423285 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.671374 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.852961 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 4.958627 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 4.032704 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.755783 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 2.33437 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 3.860259 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 8.379703 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 8.634825 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 2.948929 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 7.069582 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 8.900581 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 10.749727 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 10.071657 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg40495 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25015 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026896 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g131000 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13659, Sbi_jg52242 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9604 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017630 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33448, Sgl38815 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000201, gene:ENSEOMG00000004012 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0020440, CQ.Regalona.r1.6BG0021520 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30025130 |
| Apiaceae | Apium graveolens | 2 | Ag10G01107, Ag6G01501 |
| Arecaceae | Cocos nucifera | 1 | COCNU_15G005340 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708101 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.1426.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G07882 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G26950.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003939m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g16080.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g067150.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0077 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0083 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g09630 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g12780, gene.Thate06g08920 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2316 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.100 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G22711, Lb7G35080 |
| Poaceae | Echinochloa crus-galli | 3 | AH04.1362, BH04.1363, CH04.1543 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_9BG0708020 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0731490.1 |
| Poaceae | Oryza coarctata | 2 | Oco21G006080, Oco22G007140 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g31110.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G148600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0703778, Pt_Chr0703783 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr07G017350, Chr31G005460 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G750100 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7BG055110 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G445400.1, TraesCS7B02G344900.1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-50258 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18869 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2681, evm.TU.LG08.307 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g16960 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.808 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14481 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3672 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12411 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000061l.73 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009100 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-881 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8470 |
| Salicaceae | Populus euphratica | 1 | populus_peu01281 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622612 |
| Solanaceae | Solanum chilense | 1 | SOLCI004270400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009210 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13592 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3434 |
| Zosteraceae | Zostera marina | 1 | Zosma05g01420.v3.1 |