halophFGD

Basic Information

Locus ID: Ag6G01493

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: LYK5-like

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	76345802	76348772	-	Ag6G01493

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.08	68,814.00 Da	40.45	103.53	0.10

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00069	Protein kinase domain	348	484	8.6E-20	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	324	584	7.11E-46	IPR011009
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	319	402	1.3E-12	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	486	605	2.7E-10	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	404	485	8.8E-20	-
SMART	SM00220	serkin_6	339	584	3.6E-9	IPR000719
ProSiteProfiles	PS51782	LysM domain profile.	49	96	9.216242	IPR018392
ProSiteProfiles	PS50011	Protein kinase domain profile.	278	584	20.753672	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	453	465	-	IPR008271

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G33580.1	Protein kinase superfamily protein.
RefSeq	XP_017234234.1	PREDICTED: serine/threonine receptor-like kinase NFP [Daucus carota subsp. sativus]
Swiss-Prot	Q0GXS4	Serine/threonine receptor-like kinase NFP OS=Medicago truncatula OX=3880 GN=NFP PE=1 SV=1
TrEMBL	A0A161XI17	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_007516 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.889535	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.333468	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.393471	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.299287	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.449297	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.552217	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.341875	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.277026	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0.457575	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0.512168	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0.455173	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0.662036	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0.77794	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.758308	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.063508	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.316002	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.273089	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.30747	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.187285	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.048288	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.351791	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.338366	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.32832	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.310076	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.210215	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.725149	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.136395	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.788234		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	2.545076		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	1.327374		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	1.489171		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	1.051386		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	1.55714		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	1.244239		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.648128		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.762029		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	1.198879	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	1.111035	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	2.267587	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.060995	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.669558	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.407508	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.268402	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.098978	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	1.132475	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.629436	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.636655	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	1.136261	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg12638, jg27829, jg30621
Aizoaceae	Mesembryanthemum crystallinum	1	gene_6423
Amaranthaceae	Atriplex hortensis	3	Ah029151, Ah029152, Ah029153
Amaranthaceae	Beta vulgaris	1	BVRB_7g166020
Amaranthaceae	Salicornia bigelovii	8	Sbi_jg1092, Sbi_jg1096, Sbi_jg1097, Sbi_jg1100, Sbi_jg1101 ... Sbi_jg35484, Sbi_jg35486, Sbi_jg35488
Amaranthaceae	Salicornia europaea	4	Seu_jg3601, Seu_jg3602, Seu_jg3604, Seu_jg3605
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00022882, GOSA_00022885
Amaranthaceae	Suaeda glauca	4	Sgl74255, Sgl74334, Sgl74335, Sgl77824
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000006629, gene:ENSEOMG00000008352 ... gene:ENSEOMG00000036222, gene:ENSEOMG00000039114, gene:ENSEOMG00000039655, gene:ENSEOMG00000039913, gene:ENSEOMG00000040084, gene:ENSEOMG00000040200
Amaranthaceae	Chenopodium quinoa	7	CQ.Regalona.r1.7AG0011420, CQ.Regalona.r1.7AG0011430 ... CQ.Regalona.r1.7AG0011440, CQ.Regalona.r1.7BG0013580, CQ.Regalona.r1.7BG0013590, CQ.Regalona.r1.7BG0013600, CQ.Regalona.r1.7BG0013610
Anacardiaceae	Pistacia vera	1	pistato.v30235780
Apiaceae	Apium graveolens	4	Ag1G01816, Ag4G01026, Ag6G01493, Ag9G01739
Arecaceae	Cocos nucifera	2	COCNU_05G000280, COCNU_07G007720
Arecaceae	Phoenix dactylifera	3	gene-LOC103699281, gene-LOC103702746, gene-LOC103723952
Asparagaceae	Asparagus officinalis	3	AsparagusV1_04.2472.V1.1, AsparagusV1_08.1511.V1.1 ... AsparagusV1_08.1512.V1.1
Asteraceae	Flaveria trinervia	4	Ftri14G04152, Ftri17G21238, Ftri6G11221, FtriNA20598
Casuarinaceae	Casuarina equisetifolia	2	Ceq07G0375, Ceq09G0744
Casuarinaceae	Casuarina glauca	3	Cgl07G0386, Cgl07G0387, Cgl09G0806
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG11.913
Plantaginaceae	Plantago ovata	2	Pov_00019995, Pov_00029367
Plumbaginaceae	Limonium bicolor	1	Lb1G07902
Poaceae	Echinochloa crus-galli	6	AH01.4457, AH07.3007, BH07.2832, CH01.5067, CH07.2912 ... Contig192.99
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0140990, gene-QOZ80_2BG0196610 ... gene-QOZ80_3AG0239600, gene-QOZ80_3BG0288430
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.4HG0394920.1.CDS1 ... HORVU.MOREX.r3.6HG0604320.1
Poaceae	Lolium multiflorum	3	gene-QYE76_024435, gene-QYE76_068469, gene-QYE76_069786
Poaceae	Oryza coarctata	4	Oco03G018260, Oco04G019010, Oco06G007610, Oco06G007620
Poaceae	Oryza sativa	2	LOC_Os02g45750.1, LOC_Os03g13080.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G431400, gene-BS78_04G238300
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0203728
Poaceae	Sporobolus alterniflorus	1	Chr09G023440
Poaceae	Thinopyrum elongatum	2	Tel4E01G409200, Tel6E01G481500
Poaceae	Triticum dicoccoides	4	gene_TRIDC4AG009120, gene_TRIDC4BG041760 ... gene_TRIDC6AG039880, gene_TRIDC6BG046770
Poaceae	Triticum aestivum	6	TraesCS4A02G061400.1.cds1, TraesCS4B02G236800.1.cds1 ... TraesCS4D02G238300.1.cds1, TraesCS6A02G258900.1, TraesCS6B02G266500.1, TraesCS6D02G240100.1
Poaceae	Zea mays	4	Zm00001eb009380_P001, Zm00001eb187300_P001 ... Zm00001eb250700_P001, Zm00001eb399560_P001
Poaceae	Zoysia japonica	2	nbis-gene-22254, nbis-gene-4011
Poaceae	Zoysia macrostachya	2	Zma_g16884, Zma_g4111
Portulacaceae	Portulaca oleracea	2	evm.TU.LG03.949, evm.TU.LG12.794
Posidoniaceae	Posidonia oceanica	1	gene.Posoc02g17220
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_3_RagTag.286, evm.TU.Scaffold_3_RagTag.375 ... evm.TU.Scaffold_3_RagTag.376
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-1548, nbisL1-mrna-1549, nbisL1-mrna-17166 ... nbisL1-mrna-337, nbisL1-mrna-537
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-6967, nbisL1-mrna-7562
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-6018, nbisL1-mrna-6113
Rhizophoraceae	Kandelia candel	3	add.evm.TU.utg000019l.413, add.evm.TU.utg000019l.445 ... evm.TU.utg000019l.1001
Rhizophoraceae	Kandelia obovata	1	Maker00012766
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-15563, nbisL1-mrna-19333, nbisL1-mrna-6402 ... nbisL1-mrna-6473
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-2292, nbisL1-mrna-3136, nbisL1-mrna-3139
Salicaceae	Populus euphratica	5	populus_peu07461, populus_peu07462, populus_peu14290 ... populus_peu21474, populus_peu23509
Solanaceae	Lycium barbarum	3	gene-LOC132608981, gene-LOC132609067, gene-LOC132622935
Solanaceae	Solanum chilense	4	SOLCI002407300, SOLCI002660500, SOLCI003953000 ... SOLCI003953100
Solanaceae	Solanum pennellii	3	gene-LOC107009582, gene-LOC107030506, gene-LOC107030507
Tamaricaceae	Reaumuria soongarica	1	STRG.20256_chr09_-
Tamaricaceae	Tamarix chinensis	1	TC06G2121
Zosteraceae	Zostera marina	1	Zosma06g28740.v3.1