halophFGD

Basic Information

Locus ID: Ag6G01457

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Short Name: IAA7

Description: Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	73336827	73338615	+	Ag6G01457

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.96	32,668.56 Da	48.26	80.03	-0.29

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF02309	AUX/IAA family	35	196	1.6E-53	IPR033389
SUPERFAMILY	SSF54277	CAD & PB1 domains	93	188	2.06E-18	-
Gene3D	G3DSA:3.10.20.90	-	92	200	1.6E-39	-
ProSiteProfiles	PS51745	PB1 domain profile.	97	189	20.726122	IPR000270

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K14484 (auxin-responsive protein IAA)

Pathway:

ko04075 (Plant hormone signal transduction) map04075 (Plant hormone signal transduction)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G14550.2	-
RefSeq	XP_017232377.1	PREDICTED: auxin-responsive protein IAA1-like [Daucus carota subsp. sativus]
Swiss-Prot	Q38832	Auxin-responsive protein IAA14 OS=Arabidopsis thaliana OX=3702 GN=IAA14 PE=1 SV=2
TrEMBL	A0A166EL55	Auxin-responsive protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_007553 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	37.097385	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	39.563648	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	35.463333	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	20.307371	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	19.84075	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	23.121367	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	23.455421	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	15.708445	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	8.869641	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	12.155221	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	7.011076	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	12.362473	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	13.972498	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	11.952678	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	1.297356	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	2.015392	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	1.11041	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	6.257287	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	1.546901	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	3.44792	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	2.665306	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	5.875819	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	6.37786	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	9.800942	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	9.482714	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	1.801597	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	4.110098	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.880919	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	3.264812	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.537549		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.664749		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.904035		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	1.819177		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	31.184238		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	3.987779		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.609761		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	2.025706		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	2.859442		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.388746	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	1.008997	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.279885	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	18.329208	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	4.584606	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.400536	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	1.038488	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	9.131375	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.934693	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	80.02034	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	107.166817	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	86.326775	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg11124, jg12644, jg27827, jg35374, jg37839
Aizoaceae	Mesembryanthemum crystallinum	3	gene_10080, gene_13522, gene_26164
Amaranthaceae	Atriplex hortensis	5	Ah000272, Ah002353, Ah006130, Ah010686, Ah010689
Amaranthaceae	Beta vulgaris	3	BVRB_4g082260, BVRB_5g120320, BVRB_9g220380
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg11486, Sbi_jg16808, Sbi_jg31549, Sbi_jg46417 ... Sbi_jg57732, Sbi_jg61331
Amaranthaceae	Salicornia europaea	3	Seu_jg20737, Seu_jg23056, Seu_jg25378
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00005252, GOSA_00008210, GOSA_00019482
Amaranthaceae	Suaeda glauca	6	Sgl24837, Sgl29983, Sgl54307, Sgl55866, Sgl59651, Sgl61177
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000007236, gene:ENSEOMG00000009301 ... gene:ENSEOMG00000016268, gene:ENSEOMG00000022044, gene:ENSEOMG00000026426, gene:ENSEOMG00000028312, gene:ENSEOMG00000038928, gene:ENSEOMG00000041243, gene:ENSEOMG00000052305
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.4AG0010570, CQ.Regalona.r1.4BG0010780 ... CQ.Regalona.r1.5AG0025620, CQ.Regalona.r1.5BG0027140, CQ.Regalona.r1.7BG0010680, CQ.Regalona.r1.9AG0013930
Anacardiaceae	Pistacia vera	4	pistato.v30026330, pistato.v30126730, pistato.v30184390 ... pistato.v30235710
Apiaceae	Apium graveolens	6	Ag10G00701, Ag1G01812, Ag2G02343, Ag6G01457, Ag8G01539 ... Ag9G01735
Arecaceae	Cocos nucifera	5	COCNU_03G001830, COCNU_06G000680, COCNU_06G015060 ... COCNU_14G000940, COCNU_14G011810
Arecaceae	Phoenix dactylifera	4	gene-LOC103705980, gene-LOC103721655, gene-LOC103722711 ... gene-LOC120105940
Asparagaceae	Asparagus officinalis	1	AsparagusV1_07.3214.V1.1
Asteraceae	Flaveria trinervia	3	Ftri14G31326, Ftri9G33260, FtriNA08258
Brassicaceae	Arabidopsis thaliana	4	AT1G04250.1, AT3G04730.1, AT3G23050.1, AT4G14550.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10008679m.g.v1.0, Thhalv10021428m.g.v1.0 ... Thhalv10021441m.g.v1.0, Thhalv10026031m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g03060.v2.2, Sp3g03580.v2.2, Sp3g20720.v2.2 ... Sp7g12640.v2.2
Brassicaceae	Brassica nigra	9	BniB01g039200.2N, BniB01g058840.2N, BniB02g001610.2N ... BniB03g000750.2N, BniB03g024990.2N, BniB06g046620.2N, BniB07g020120.2N, BniB07g048860.2N, BniB07g062090.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq06G0708, Ceq06G1393, Ceq06G2378, Ceq07G0381
Casuarinaceae	Casuarina glauca	4	Cgl06G0730, Cgl06G1456, Cgl06G2502, Cgl07G0393
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno01g01280, gene.Cymno06g02130, gene.Cymno06g12860
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g40890, gene.Thate02g40990
Malvaceae	Hibiscus hamabo Siebold & Zucc.	4	nbisL1-mrna-5002, nbisL1-mrna-6331, nbisL1-mrna-6333 ... nbisL1-mrna-7868
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG03.2256, evm.TU.LG04.1192, evm.TU.LG11.907
Plantaginaceae	Plantago ovata	3	Pov_00007915, Pov_00018007, Pov_00024671
Plumbaginaceae	Limonium bicolor	5	Lb1G06946, Lb1G07951, Lb2G10315, Lb3G18377, Lb3G18983
Poaceae	Echinochloa crus-galli	16	AH01.1210, AH05.3968, AH05.581, AH06.1662, BH01.1513 ... BH01.789, BH05.4060, BH05.628, BH06.1603, CH01.1438, CH01.785, CH01.787, CH05.4270, CH05.724, CH06.1760, Contig309.126
Poaceae	Eleusine coracana subsp. coracana	11	gene-QOZ80_1AG0000810, gene-QOZ80_3AG0216690 ... gene-QOZ80_3AG0225050, gene-QOZ80_3BG0261960, gene-QOZ80_3BG0270310, gene-QOZ80_5AG0396890, gene-QOZ80_5AG0400970, gene-QOZ80_5BG0445380, gene-QOZ80_5BG0449560, gene-QOZ80_6AG0530850, gene-QOZ80_6BG0484690
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.5HG0433470.1, HORVU.MOREX.r3.5HG0509120.1 ... HORVU.MOREX.r3.5HG0509730.1, HORVU.MOREX.r3.5HG0509760.1, HORVU.MOREX.r3.7HG0711230.1
Poaceae	Lolium multiflorum	4	gene-QYE76_000687, gene-QYE76_010490, gene-QYE76_035400 ... gene-QYE76_062927
Poaceae	Oryza coarctata	7	Oco01G005800, Oco02G005890, Oco06G019310, Oco06G024120 ... Oco12G009730, Oco23G009900, Oco24G009580
Poaceae	Oryza sativa	6	LOC_Os01g13030.1, LOC_Os03g43400.1, LOC_Os03g53150.1 ... LOC_Os05g14180.1, LOC_Os06g22870.1, LOC_Os12g40890.1
Poaceae	Paspalum vaginatum	4	gene-BS78_01G085300, gene-BS78_01G148800, gene-BS78_K179600 ... gene-BS78_08G135700
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0100429, Pt_Chr0104448, Pt_Chr0107106, Pt_Chr0501467 ... Pt_Chr0704300
Poaceae	Sporobolus alterniflorus	12	Chr01G005580, Chr01G010970, Chr04G028360, Chr07G027310 ... Chr12G025960, Chr12G037930, Chr14G017350, Chr18G004990, Chr19G008040, Chr21G011790, Chr22G012400, Chr27G008620
Poaceae	Thinopyrum elongatum	5	Tel3E01G273600, Tel5E01G125800, Tel5E01G602200 ... Tel5E01G609500, Tel7E01G583200
Poaceae	Triticum dicoccoides	9	gene_TRIDC3AG020910, gene_TRIDC3BG031190 ... gene_TRIDC5AG008920, gene_TRIDC5AG055320, gene_TRIDC5AG055920, gene_TRIDC5BG009670, gene_TRIDC5BG059920, gene_TRIDC7AG047560, gene_TRIDC7BG040020
Poaceae	Triticum aestivum	15	TraesCS3A02G155200.1, TraesCS3B02G181500.1 ... TraesCS3D02G162700.1, TraesCS5A02G058600.1, TraesCS5A02G378300.2, TraesCS5A02G382600.1, TraesCS5B02G058500.1, TraesCS5B02G381900.1, TraesCS5B02G386800.1, TraesCS5D02G069300.1, TraesCS5D02G388300.2, TraesCS5D02G392000.1, TraesCS7A02G331100.1, TraesCS7B02G242800.1, TraesCS7D02G339300.1
Poaceae	Zea mays	4	Zm00001eb056870_P001, Zm00001eb135550_P001 ... Zm00001eb215120_P001, Zm00001eb350370_P005
Poaceae	Zoysia japonica	7	nbis-gene-15030, nbis-gene-16112, nbis-gene-24271 ... nbis-gene-35452, nbis-gene-44587, nbis-gene-47576, nbis-gene-47901
Poaceae	Zoysia macrostachya	8	Zma_g25292, Zma_g26085, Zma_g27888, Zma_g2824, Zma_g30120 ... Zma_g32319, Zma_g503, Zma_g9503
Portulacaceae	Portulaca oleracea	10	evm.TU.LG01.2868, evm.TU.LG02.1145, evm.TU.LG07.1722 ... evm.TU.LG08.524, evm.TU.LG09.828, evm.TU.LG11.550, evm.TU.LG15.1484, evm.TU.LG16.1241, evm.TU.LG20.1258, evm.TU.LG22.1553
Posidoniaceae	Posidonia oceanica	1	gene.Posoc03g02690
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_18_RagTag.468, evm.TU.Scaffold_1_RagTag.281 ... evm.TU.Scaffold_2_RagTag.1943, evm.TU.Scaffold_6_RagTag.817, evm.TU.Scaffold_9_RagTag.954
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-1554, nbisL1-mrna-15869, nbisL1-mrna-21246 ... nbisL1-mrna-3360, nbisL1-mrna-7919
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-10099, nbisL1-mrna-10705, nbisL1-mrna-18117 ... nbisL1-mrna-7608
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-13778, nbisL1-mrna-18353, nbisL1-mrna-5339 ... nbisL1-mrna-693, nbisL1-mrna-7892
Rhizophoraceae	Kandelia candel	5	evm.TU.utg000003l.493, evm.TU.utg000009l.124 ... evm.TU.utg000011l.505, evm.TU.utg000012l.190, evm.TU.utg000023l.172
Rhizophoraceae	Kandelia obovata	5	Maker00005777, Maker00007555, Maker00009251, Maker00011225 ... Maker00018742
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-12914, nbisL1-mrna-1477, nbisL1-mrna-15255 ... nbisL1-mrna-7311, nbisL1-mrna-7770
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-16248, nbisL1-mrna-256, nbisL1-mrna-4224 ... nbisL1-mrna-5093
Salicaceae	Populus euphratica	9	populus_peu02797, populus_peu02804, populus_peu07468 ... populus_peu13586, populus_peu15127, populus_peu15928, populus_peu21481, populus_peu32790, populus_peu33621
Solanaceae	Lycium barbarum	6	gene-LOC132598496, gene-LOC132605635, gene-LOC132610770 ... gene-LOC132633355, gene-LOC132642624, gene-LOC132645298
Solanaceae	Solanum chilense	3	SOLCI001357900, SOLCI001391400, SOLCI002322500
Solanaceae	Solanum pennellii	5	gene-LOC107008367, gene-LOC107012644, gene-LOC107021546 ... gene-LOC107022057, gene-LOC107031695
Tamaricaceae	Reaumuria soongarica	2	STRG.17638_chr09_-, STRG.28466_chr04_-
Tamaricaceae	Tamarix chinensis	4	TC02G3469, TC05G1184, TC07G2315, TC12G1301
Zosteraceae	Zostera marina	1	Zosma06g24040.v3.1