Basic Information
Locus ID:
Ag6G01456
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
NUP50 (Nucleoporin 50 kDa)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 73321257 | 73322330 | + | Ag6G01456 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.65 | 37,943.78 Da | 41.47 | 54.37 | -0.76 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08911 | NUP50 (Nucleoporin 50 kDa) | 13 | 73 | 9.7E-14 | IPR015007 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 196 | 241 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 45 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 91 | 246 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 164 | 189 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 154 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G52380.1 | NUP50 (Nucleoporin 50 kDa) protein. | 0 |
| RefSeq | XP_017231688.1 | PREDICTED: nuclear pore complex protein NUP50A-like [Daucus carota subsp. sativus] | 0 |
| Q9C829 | Nuclear pore complex protein NUP50A OS=Arabidopsis thaliana OX=3702 GN=NUP50A PE=1 SV=1 | 0 | |
| TrEMBL | A0A164UQY4 | RanBD1 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_026310 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 21.376778 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 13.184593 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 14.488603 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 15.156705 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 16.429712 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 17.112108 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 16.535669 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 18.33721 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 28.154222 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 33.457485 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 37.452385 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 32.101151 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 31.317961 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 24.427593 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 8.319477 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 8.096445 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 10.227736 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 14.534787 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 12.014028 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 15.308895 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 18.132362 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 12.697537 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 15.552176 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 13.174124 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 14.653667 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 22.608175 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 18.468658 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 25.020679 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 22.473751 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.015995 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 11.306796 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 5.832848 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 7.849018 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 3.332823 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 6.54135 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.547115 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.614829 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.799447 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 22.569485 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 19.287628 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 16.314255 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 13.239677 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 16.676306 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 43.759701 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 52.006721 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 10.09608 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 45.320919 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 10.322412 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 14.716182 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 10.959148 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18181 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26154 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010675 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g220460 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11468, Sbi_jg46401 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20724 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005263 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55889, Sgl61079 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000019614, gene:ENSEOMG00000038857 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0010820, CQ.Regalona.r1.9AG0013810 |
| Apiaceae | Apium graveolens | 3 | Ag5G00834, Ag6G01455, Ag6G01456 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G000490, COCNU_03G016050 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103704584, gene-LOC103709734, gene-LOC120111515 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.2021.V1.1, AsparagusV1_06.1159.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G31180, Ftri4G19743 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G52380.1, AT3G15970.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10011504m.g.v1.0, Thhalv10020773m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g38990.v2.2, Sp3g14320.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB04g057400.2N, BniB06g028360.2N, BniB07g028590.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0227 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0236 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno10g08560, gene.Cymno14g07250 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0012s00025.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g15230 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-3211, nbisL1-mrna-4532, nbisL1-mrna-7407 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00015428, Pov_00024989 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G23405 |
| Poaceae | Echinochloa crus-galli | 6 | AH03.322, AH05.2851, BH03.402, BH05.2900, CH03.470 ... |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5AG0376770 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0061740.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_012881, gene-QYE76_012938 |
| Poaceae | Oryza coarctata | 2 | Oco09G007220, Oco10G007480 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g28190.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G317100 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr12G015370, Chr18G006070, Chr22G010730 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G379000, Tel7E01G753600 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG033810, gene_TRIDC1BG039190 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G224800.1, TraesCS1B02G238000.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb155830_P002, Zm00001eb360880_P001 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g26668, Zma_g27967 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1187, evm.TU.LG11.543 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g15760 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.1254 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-27856, nbisL1-mrna-6972 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10714, nbisL1-mrna-14797 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16988, nbisL1-mrna-7904 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000023l.76, add.evm.TU.utg000033l.186 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00014756, Maker00017488 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-23404 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-18020, nbisL1-mrna-21261 |
| Salicaceae | Populus euphratica | 3 | populus_peu02778, populus_peu33695, populus_peu33723 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132598472, gene-LOC132633345 |
| Solanaceae | Solanum chilense | 2 | SOLCI001215800, SOLCI001859600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107014818, gene-LOC107021139 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.19081_chr07_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC08G2086, TC10G1951 |
| Zosteraceae | Zostera marina | 1 | Zosma01g24890.v3.1 |