Basic Information
Locus ID:
Ag6G01439
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
lysM domain receptor-like kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 70358102 | 70363745 | + | Ag6G01439 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.83 | 72,338.27 Da | 38.64 | 89.31 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 150 | 193 | 1.01126E-6 | IPR018392 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 344 | 621 | 1.1E-47 | IPR001245 |
| Pfam | PF01476 | LysM domain | 151 | 189 | 2.9E-4 | IPR018392 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 323 | 622 | 1.89E-75 | IPR011009 |
| SUPERFAMILY | SSF54106 | LysM domain | 149 | 194 | 1.31E-6 | IPR036779 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 413 | 637 | 6.5E-58 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 146 | 200 | 9.4E-8 | IPR036779 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 315 | 411 | 3.0E-25 | - |
| SMART | SM00220 | serkin_6 | 340 | 627 | 8.2E-38 | IPR000719 |
| SMART | SM00257 | LysM_2 | 150 | 194 | 1.7E-6 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 340 | 627 | 40.088982 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 149 | 193 | 13.238833 | IPR018392 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 346 | 367 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 459 | 471 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G51940.1 | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein. | 0 |
| RefSeq | XP_017236707.1 | PREDICTED: lysM domain receptor-like kinase 3 [Daucus carota subsp. sativus] | 0 |
| F4IB81 | LysM domain receptor-like kinase 3 OS=Arabidopsis thaliana OX=3702 GN=LYK3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166EM29 | LysM domain receptor-like kinase 3 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_007585 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 12.887474 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 10.526885 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 8.856899 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 9.150743 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 9.456259 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 7.558267 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 8.309495 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 6.860044 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 21.56963 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 17.220421 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 20.540375 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 24.89287 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 20.176991 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 19.212902 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 45.714626 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 57.042652 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 53.505741 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 44.440388 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 46.977932 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 40.471066 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 33.545326 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 33.625267 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 36.178219 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 32.545902 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 32.543411 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 39.846615 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 45.050781 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 25.68331 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 31.818247 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 9.204158 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 7.921184 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 9.686743 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 4.308927 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 22.959839 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 3.829968 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 7.715847 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.29066 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.909075 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 32.892639 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 23.723293 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 14.019806 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 9.330321 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 11.206938 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 26.871681 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 29.670563 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 11.516411 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 16.653877 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 38.50116 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 32.046806 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 42.940746 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg25288 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26099 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah011021 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11302, Sbi_jg46261 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20599 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005374 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl44480, Sgl49235, Sgl56266, Sgl61775 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016305, gene:ENSEOMG00000040023 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0012210, CQ.Regalona.r1.9BG0010230 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30123190 |
| Apiaceae | Apium graveolens | 1 | Ag6G01439 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G004300 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721889 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2689.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G02090, Ftri1G19919 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G51940.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10011293m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g38580.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g057930.2N, BniB07g004030.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0354 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0370 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g11910 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g24940 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-3313 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.272 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00015345, Pov_00025749 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G15538 |
| Poaceae | Echinochloa crus-galli | 4 | AH02.3130, AH02.3131, BH02.3199, CH02.3322 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0032610, gene-QOZ80_1BG0082800 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0287750.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_055331 |
| Poaceae | Oryza coarctata | 2 | Oco01G019560, Oco02G020300 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g53840.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G270900 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0602250, Pt_Chr0602290, Pt_Chr0603808, Pt_Ctg00413 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr03G015750, Chr05G023320, Chr08G015870 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G456600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG041100, gene_TRIDC3BG046350 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G276600.2, TraesCS3B02G310800.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb153700_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-12865, nbis-gene-12866 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g8619 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.1649, evm.TU.LG15.1613 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g21980 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_18_RagTag.597 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-27832 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15372 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7992 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000023l.108 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018773 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7390 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21356 |
| Salicaceae | Populus euphratica | 1 | populus_peu02683 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633418 |
| Solanaceae | Solanum chilense | 1 | SOLCI006087900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015366 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10060 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G1918 |
| Zosteraceae | Zostera marina | 1 | Zosma05g25330.v3.1 |