halophFGD

Basic Information

Locus ID: Ag6G01416

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Jacalin-like lectin domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	69229927	69230754	-	Ag6G01416

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.19	19,463.82 Da	41.47	73.56	-0.34

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd09612	Jacalin	28	159	3.06113E-47	IPR033734
Pfam	PF01419	Jacalin-like lectin domain	28	160	2.5E-31	IPR001229
SUPERFAMILY	SSF51101	Mannose-binding lectins	20	160	7.72E-43	IPR036404
Gene3D	G3DSA:2.100.10.30	-	3	159	9.7E-54	IPR036404
SMART	SM00915	Jacalin_2	28	160	6.9E-40	IPR001229
ProSiteProfiles	PS51752	Jacalin-type lectin domain profile.	17	160	49.998455	IPR001229

Gene Ontology

Molecular Function:

GO:0030246 (carbohydrate binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G73040.1	Mannose-binding lectin superfamily protein.
RefSeq	XP_017235879.1	PREDICTED: jacalin-related lectin 19 [Daucus carota subsp. sativus]
Swiss-Prot	Q9SSM3	Jacalin-related lectin 19 OS=Arabidopsis thaliana OX=3702 GN=JAL19 PE=2 SV=1
TrEMBL	A0A166EML8	Jacalin-type lectin domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_007605 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	17.033207	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	23.61067	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	32.892326	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	31.930981	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	33.186089	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	37.425716	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	30.407188	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	19.20723	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	15.404106	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	20.068209	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	17.020607	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	12.386916	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	18.373741	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	12.185796	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	2.582492	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	7.317273	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	37.301403	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	16.663742	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	22.466454	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	34.771065	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	48.153229	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	100.146851	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	110.929832	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	155.009293	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	153.610199	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	42.572643	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	34.232933	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	47.753414	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	32.227707	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	5.978619		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	15.352839		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	14.703466		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	188.225845		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	93.994408		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	152.832489		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	25.848228		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	30.185417		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	25.953819		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	5.209122	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	39.283775	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	11.436175	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	25.424677	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	6.600485	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	1.966506	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	6.280929	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	20.758244	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	7.352385	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	22.686396	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	68.639145	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	65.030678	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg10582, jg13569, jg22875, jg27248
Aizoaceae	Mesembryanthemum crystallinum	2	gene_23077, gene_23079
Amaranthaceae	Atriplex hortensis	2	Ah011355, Ah023472
Amaranthaceae	Beta vulgaris	4	BVRB_1g006640, BVRB_1g006650, BVRB_1g006670, BVRB_9g211560
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg28803, Sbi_jg3146, Sbi_jg3153, Sbi_jg39146
Amaranthaceae	Salicornia europaea	2	Seu_jg11011, Seu_jg6762
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00000023, GOSA_00009615, GOSA_00014151
Amaranthaceae	Suaeda glauca	9	Sgl11510, Sgl11514, Sgl11516, Sgl11596, Sgl11600, Sgl16965 ... Sgl16968, Sgl17093, Sgl17097
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000013345, gene:ENSEOMG00000013653 ... gene:ENSEOMG00000015107, gene:ENSEOMG00000033716, gene:ENSEOMG00000035061, gene:ENSEOMG00000039654, gene:ENSEOMG00000047367, gene:ENSEOMG00000049597, gene:ENSEOMG00000052705
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.1AG0008880, CQ.Regalona.r1.1BG0016950 ... CQ.Regalona.r1.1BG0016970, CQ.Regalona.r1.7AG0015310, CQ.Regalona.r1.9BG0011020
Anacardiaceae	Pistacia vera	1	pistato.v30116130
Apiaceae	Apium graveolens	4	Ag1G00379, Ag2G02820, Ag4G02274, Ag6G01416
Arecaceae	Cocos nucifera	2	COCNU_06G013050, COCNU_06G013120
Arecaceae	Phoenix dactylifera	2	gene-LOC103717797, gene-LOC103719297
Asparagaceae	Asparagus officinalis	3	AsparagusV1_03.2115.V1.1, AsparagusV1_05.2895.V1.1 ... AsparagusV1_08.2928.V1.1
Asteraceae	Flaveria trinervia	6	Ftri10G02662, Ftri10G07324, Ftri10G25229, Ftri10G27720 ... Ftri10G32015, Ftri18G05095
Brassicaceae	Arabidopsis thaliana	2	AT1G19715.3, AT1G73040.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10007145m.g.v1.0, Thhalv10019210m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g17550.v2.2, Sp5g28000.v2.2
Brassicaceae	Brassica nigra	3	BniB03g008330.2N, BniB04g034420.2N, BniB05g070250.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G0901, Ceq03G0975
Casuarinaceae	Casuarina glauca	2	Cgl02G0914, Cgl03G1061
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno10g09320, gene.Cymno16g03180
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g03190, gene.Thate01g03210, gene.Thate09g07520
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-1340
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.13, evm.TU.LG06.628
Plantaginaceae	Plantago ovata	1	Pov_00015244
Plumbaginaceae	Limonium bicolor	12	Lb0G36806, Lb0G37360, Lb0G38063, Lb0G38278, Lb0G38317 ... Lb1G00549, Lb1G00551, Lb1G00554, Lb1G02726, Lb2G09419, Lb7G34303, Lb8G35786
Poaceae	Echinochloa crus-galli	9	AH02.3457, AH05.1812, AH08.2131, BH02.3499, BH05.1978 ... CH02.3041, CH02.3531, CH05.2044, CH08.2422
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_1AG0035380, gene-QOZ80_1BG0080450 ... gene-QOZ80_1BG0085430, gene-QOZ80_5AG0364930, gene-QOZ80_5AG0367290, gene-QOZ80_5BG0412790, gene-QOZ80_5BG0415010
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.1HG0076420.1, HORVU.MOREX.r3.1HG0080180.1 ... HORVU.MOREX.r3.3HG0223290.1, HORVU.MOREX.r3.3HG0292920.1, HORVU.MOREX.r3.7HG0682630.1
Poaceae	Lolium multiflorum	14	gene-QYE76_000100, gene-QYE76_014812, gene-QYE76_016264 ... gene-QYE76_017484, gene-QYE76_024985, gene-QYE76_030195, gene-QYE76_048484, gene-QYE76_048486, gene-QYE76_049155, gene-QYE76_049156, gene-QYE76_049165, gene-QYE76_049168, gene-QYE76_049169, gene-QYE76_049171
Poaceae	Oryza coarctata	7	Oco02G018700, Oco02G022290, Oco09G013680, Oco09G015600 ... Oco10G013760, Oco10G015470, Oco15G010450
Poaceae	Oryza sativa	2	LOC_Os01g51050.1, LOC_Os05g43240.1
Poaceae	Paspalum vaginatum	5	gene-BS78_03G250500, gene-BS78_03G294300, gene-BS78_K113200 ... gene-BS78_09G195900, gene-BS78_09G219000
Poaceae	Puccinellia tenuiflora	12	Pt_Chr0205493, Pt_Chr0205497, Pt_Chr0206968, Pt_Chr0206969 ... Pt_Chr0403695, Pt_Chr0503873, Pt_Chr0503896, Pt_Chr0504260, Pt_Chr0504311, Pt_Chr0601571, Pt_Chr0601601, Pt_Chr0700174
Poaceae	Sporobolus alterniflorus	11	Chr01G014880, Chr02G008190, Chr02G011660, Chr05G025350 ... Chr12G022010, Chr18G013400, Chr18G015100, Chr20G001510, Chr22G002450, Chr22G004290, Chr29G001880
Poaceae	Thinopyrum elongatum	4	Tel1E01G530900, Tel1E01G591000, Tel3E01G506800 ... Tel7E01G451800
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG048350, gene_TRIDC1BG054910 ... gene_TRIDC1BG061170, gene_TRIDC3AG045650, gene_TRIDC3BG023590, gene_TRIDC3BG051780
Poaceae	Triticum aestivum	23	TraesCS1A02G325500.1, TraesCS1A02G363600.1 ... TraesCS1B02G338600.1, TraesCS1B02G380700.1, TraesCS1D02G327100.1, TraesCS1D02G367900.1, TraesCS1D02G368600.1, TraesCS3A02G131600.1, TraesCS3A02G321000.1, TraesCS3B02G031800.1, TraesCS3B02G032600.1, TraesCS3B02G052500.1, TraesCS3B02G053100.1, TraesCS3B02G165200.1, TraesCS3B02G344800.1, TraesCS3D02G028700.1, TraesCS3D02G029200.1, TraesCS3D02G310300.1, TraesCS6A02G105700.1, TraesCS6B02G135000.1, TraesCS7A02G256100.1, TraesCS7B02G152700.1, TraesCS7D02G254500.1
Poaceae	Zea mays	4	Zm00001eb292320_P001, Zm00001eb342390_P002 ... Zm00001eb362900_P001, Zm00001eb369990_P001
Poaceae	Zoysia japonica	5	nbis-gene-11766, nbis-gene-11767, nbis-gene-12697 ... nbis-gene-14375, nbis-gene-24999
Poaceae	Zoysia macrostachya	5	Zma_g24404, Zma_g26906, Zma_g28703, Zma_g8504, Zma_g8764
Portulacaceae	Portulaca oleracea	4	evm.TU.LG04.1672, evm.TU.LG10.1158, evm.TU.LG19.563 ... evm.TU.LG24.25
Posidoniaceae	Posidonia oceanica	3	gene.Posoc03g11420, gene.Posoc04g19300, gene.Posoc09g05680
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_8_RagTag.1285, evm.TU.Scaffold_8_RagTag.1286
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-9058, nbisL1-mrna-9061, nbisL1-mrna-9062
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-19028
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-15363
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000018l.421
Rhizophoraceae	Kandelia obovata	1	Maker00002978
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-13340, nbisL1-mrna-13341
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-11138, nbisL1-mrna-11139
Salicaceae	Populus euphratica	6	populus_peu15272, populus_peu15273, populus_peu23891 ... populus_peu23895, populus_peu30628, populus_peu32931
Solanaceae	Lycium barbarum	5	gene-LOC132611111, gene-LOC132620346, gene-LOC132623605 ... gene-LOC132629141, gene-LOC132633440
Solanaceae	Solanum chilense	4	SOLCI001343200, SOLCI001343300, SOLCI001819000 ... SOLCI003839100
Solanaceae	Solanum pennellii	4	gene-LOC107002166, gene-LOC107014445, gene-LOC107016210 ... gene-LOC107017061
Tamaricaceae	Reaumuria soongarica	9	STRG.18917_chr07_-, STRG.18921_chr07_-, STRG.18923_chr07_- ... gene_10845, gene_10846, gene_155, gene_1697, gene_4839, gene_6767
Tamaricaceae	Tamarix chinensis	5	TC04G1639, TC08G1814, TC08G1816, TC08G1817, TC08G1820
Zosteraceae	Zostera marina	1	Zosma05g12300.v3.1