Basic Information
Locus ID:
Ag6G01413
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 69171062 | 69179030 | + | Ag6G01413 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.53 | 108,447.50 Da | 45.07 | 63.78 | -0.95 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07303 | Occludin homology domain | 874 | 970 | 2.0E-11 | IPR010844 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 228 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 494 | 514 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 772 | 795 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 447 | 552 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 274 | 297 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 177 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 515 | 541 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 772 | 796 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 274 | 296 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 383 | 403 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 383 | 406 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 466 | 480 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G21290.1 | dentin sialophosphoprotein-related. | 0 |
| RefSeq | XP_017235957.1 | PREDICTED: uncharacterized protein LOC108209522 isoform X1 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A166EMT4 | OCEL domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_007608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 7.293339 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 3.227957 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.871806 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 3.870945 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 3.522155 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 3.914044 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 3.447747 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 5.105791 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 5.192957 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 5.562517 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 5.763927 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 5.964523 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 6.01821 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 4.376448 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.327177 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.852962 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 1.66185 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.294309 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 1.073414 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.29923 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 1.729197 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 1.305585 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 1.487152 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 2.032791 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 1.880424 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 2.098036 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 2.152356 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 1.431798 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 1.727592 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.318915 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.106797 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.157843 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.715166 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 1.80165 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.587101 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.267987 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.31405 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.136432 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 2.399571 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.80522 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.129012 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 3.849053 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 2.302904 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.759913 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 1.393844 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 3.836001 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 3.308088 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 3.558578 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 5.217756 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 4.151243 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18077 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21259 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah011409 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g211340 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11872, Sbi_jg46802 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21106 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009399 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl80218, Sgl80219, Sgl82668 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000017241, gene:ENSEOMG00000038247 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0011090, CQ.Regalona.r1.9BG0011370 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30116220 |
| Apiaceae | Apium graveolens | 2 | Ag5G00889, Ag6G01413 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G007390 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711004 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1882.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G05189, Ftri1G11915 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G21290.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10019924m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g19330.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g042050.2N |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g07130 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g12830 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-793 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.21 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015239 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G18088 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.4723, CH01.5300, Contig181.146 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0236550, gene-QOZ80_3BG0291490 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0406300.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_037493 |
| Poaceae | Oryza coarctata | 2 | Oco05G004870, Oco06G004990 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g08820.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G455600 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0101402, Pt_Chr0101403, Pt_Chr0107706, Pt_Chr0107707 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G025770, Chr12G013580 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G504700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG000210, gene_TRIDC4BG051600 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G002100.1, TraesCS4B02G303000.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb006560_P001, Zm00001eb104770_P002 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-2682, nbis-gene-4270, nbis-gene-4271 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1915, Zma_g4272 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1119, evm.TU.LG11.393 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g30020, gene.Posoc04g17480 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_18_RagTag.644 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-27765 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15520 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-8024, nbisL1-mrna-8025 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000023l.75 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00019065 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7402 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-24318 |
| Salicaceae | Populus euphratica | 2 | populus_peu12132, populus_peu37060 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633447 |
| Solanaceae | Solanum chilense | 1 | SOLCI003839900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014847 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10034 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G1785 |
| Zosteraceae | Zostera marina | 2 | Zosma01g07280.v3.1, Zosma01g08960.v3.1 |