halophFGD

Basic Information

Locus ID: Ag6G01410

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: phosphatase 2A 55 kDa regulatory subunit B

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	69040743	69045542	+	Ag6G01410

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.58	39,579.63 Da	52.69	74.13	-0.35

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00400	WD domain, G-beta repeat	70	106	0.066	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	63	352	6.51E-22	IPR036322
Gene3D	G3DSA:2.130.10.10	-	8	165	9.9E-11	IPR015943
Gene3D	G3DSA:2.130.10.10	-	166	353	1.7E-7	IPR015943
SMART	SM00320	WD40_4	67	106	0.19	IPR001680
SMART	SM00320	WD40_4	218	272	250.0	IPR001680
SMART	SM00320	WD40_4	117	157	11.0	IPR001680
PIRSF	PIRSF037309	PPA2_B55	10	358	1.0E-139	IPR000009
ProSitePatterns	PS01025	Protein phosphatase 2A regulatory subunit PR55 signature 2.	76	90	-	IPR018067
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	219	244	2.7E-116	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	245	271	2.7E-116	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	191	218	2.7E-116	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	106	133	2.7E-116	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	78	105	2.7E-116	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	163	190	2.7E-116	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	134	162	2.7E-116	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	327	356	2.7E-116	IPR000009

Gene Ontology

Molecular Function:

GO:0005515 (protein binding) GO:0019888 (protein phosphatase regulator activity)

Cellular Component:

GO:0000159 (protein phosphatase type 2A complex)

KEGG Pathway

KO Term:

K04354 (serine/threonine-protein phosphatase 2A regulatory subunit B)

Pathway:

ko03015 (mRNA surveillance pathway) map03015 (mRNA surveillance pathway) ko04071 (Sphingolipid signaling pathway) map04071 (Sphingolipid signaling pathway) ko04111 (Cell cycle - yeast) map04111 (Cell cycle - yeast) ko04151 (PI3K-Akt signaling pathway) map04151 (PI3K-Akt signaling pathway) ko04152 (AMPK signaling pathway) map04152 (AMPK signaling pathway) ko04390 (Hippo signaling pathway) map04390 (Hippo signaling pathway) ko04391 (Hippo signaling pathway - fly) map04391 (Hippo signaling pathway - fly)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G17720.2	Protein phosphatase 2A, regulatory subunit PR55. type 2A protein serine/threonine phosphatase 55 kDa B
RefSeq	XP_017235933.1	PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform [Daucus carota subsp. sativus]
Swiss-Prot	A2X2K3	Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Oryza sativa subsp. indica OX=39946 GN=OsI_006296 PE=2 SV=2
TrEMBL	A0A7J7HVX7	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Camellia sinensis OX=4442 GN=HYC85_004227 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	31.094416	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	28.095854	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	24.821423	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	23.176302	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	28.200893	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	24.311495	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	25.686983	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	22.930014	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	25.693674	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	28.267294	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	31.109097	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	40.230721	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	34.998051	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	26.318659	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	15.825418	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	22.158184	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	16.029596	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	23.467487	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	19.482912	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	26.199221	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	25.712654	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	19.144457	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	20.111906	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	18.892925	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	22.352152	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	23.9175	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	25.450134	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	17.559181	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	21.220129	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	9.905208		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	11.985198		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	9.386842		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	14.685441		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	15.241001		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	17.848221		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	12.870726		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	7.466684		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	9.133006		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	16.85677	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	13.180927	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	10.941269	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	34.96199	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	29.371656	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	33.74427	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	26.588026	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	39.616653	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	27.108269	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	27.702377	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	21.248709	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	17.337158	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg13574, jg18075, jg18764, jg25258
Aizoaceae	Mesembryanthemum crystallinum	2	gene_13182, gene_21265
Amaranthaceae	Atriplex hortensis	2	Ah011387, Ah034602
Amaranthaceae	Beta vulgaris	2	BVRB_2g033360, BVRB_9g211380
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg11876, Sbi_jg46797
Amaranthaceae	Salicornia europaea	1	Seu_jg21101
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00020959
Amaranthaceae	Suaeda glauca	2	Sgl80203, Sgl82652
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000016771, gene:ENSEOMG00000017072 ... gene:ENSEOMG00000019315, gene:ENSEOMG00000037230, gene:ENSEOMG00000051526, gene:ENSEOMG00000052976
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.2AG0014560, CQ.Regalona.r1.2BG0016560 ... CQ.Regalona.r1.9AG0011190, CQ.Regalona.r1.9BG0011270
Anacardiaceae	Pistacia vera	3	pistato.v30116380, pistato.v30139490, pistato.v30254480
Apiaceae	Apium graveolens	5	Ag4G00186, Ag4G00187, Ag5G00697, Ag5G00891, Ag6G01410
Arecaceae	Cocos nucifera	5	COCNU_02G001610, COCNU_03G014860, COCNU_05G010850 ... COCNU_06G005110, COCNU_14G003240
Arecaceae	Phoenix dactylifera	8	gene-LOC103702009, gene-LOC103703801, gene-LOC103709550 ... gene-LOC103711232, gene-LOC103721824, gene-LOC113462214, gene-LOC120107243, gene-LOC120109337
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.295.V1.1, AsparagusV1_05.2915.V1.1 ... AsparagusV1_06.558.V1.1
Asteraceae	Flaveria trinervia	8	Ftri10G25207, Ftri13G15029, Ftri18G18631, Ftri1G11803 ... Ftri3G32009, Ftri4G06019, Ftri4G25630, Ftri8G24664
Brassicaceae	Arabidopsis thaliana	2	AT1G17720.1, AT1G51690.3
Brassicaceae	Eutrema salsugineum	3	Thhalv10007406m.g.v1.0, Thhalv10011420m.g.v1.0 ... Thhalv10020527m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g15810.v2.2, Sp1g38330.v2.2, Sp3g19300.v2.2
Brassicaceae	Brassica nigra	8	BniB01g042070.2N, BniB03g007210.2N, BniB03g027760.2N ... BniB04g032070.2N, BniB04g058240.2N, BniB06g029070.2N, BniB07g004100.2N, BniB07g049970.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq02G0891, Ceq03G1657, Ceq03G2248, Ceq04G1961
Casuarinaceae	Casuarina glauca	3	Cgl02G0904, Cgl03G2385, Cgl04G2148
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno01g11750, gene.Cymno06g05450, gene.Cymno12g02800 ... gene.Cymno16g03380
Dunaliellaceae	Dunaliella salina	1	Dusal.0038s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g34590, gene.Thate09g07390, gene.Thate09g07950
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-7468, nbisL1-mrna-794
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.24, evm.TU.LG07.888, evm.TU.LG10.720
Plantaginaceae	Plantago ovata	3	Pov_00015237, Pov_00022145, Pov_00025792
Plumbaginaceae	Limonium bicolor	4	Lb1G05140, Lb2G14900, Lb3G20071, Lb4G26300
Poaceae	Echinochloa crus-galli	9	AH02.2233, AH06.2044, AH07.892, BH02.2336, BH06.1884 ... BH07.1019, CH02.2509, CH06.2065, CH07.773
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_1AG0023420, gene-QOZ80_1BG0073940 ... gene-QOZ80_2AG0137550, gene-QOZ80_2BG0193180, gene-QOZ80_6AG0543070, gene-QOZ80_6BG0496290
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.3HG0269870.1, HORVU.MOREX.r3.6HG0580090.2 ... HORVU.MOREX.r3.7HG0717590.1
Poaceae	Lolium multiflorum	3	gene-QYE76_021739, gene-QYE76_034512, gene-QYE76_053613
Poaceae	Oryza coarctata	7	Oco01G013920, Oco02G014170, Oco03G005890, Oco04G006120 ... Oco04G016030, Oco11G011280, Oco12G011400
Poaceae	Oryza sativa	3	LOC_Os01g41630.1, LOC_Os02g13110.2, LOC_Os06g36770.1
Poaceae	Paspalum vaginatum	3	gene-BS78_03G184700, gene-BS78_04G198300 ... gene-BS78_10G168300
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0400470, Pt_Chr0400486, Pt_Chr0603201, Pt_Chr0603229 ... Pt_Chr0605368
Poaceae	Sporobolus alterniflorus	8	Chr02G016220, Chr02G029070, Chr03G010390, Chr05G006690 ... Chr05G017690, Chr08G010610, Chr10G016550, Chr11G005850
Poaceae	Thinopyrum elongatum	3	Tel3E01G370800, Tel6E01G369600, Tel7E01G622500
Poaceae	Triticum dicoccoides	6	gene_TRIDC3AG032040, gene_TRIDC3BG036680 ... gene_TRIDC6AG027410, gene_TRIDC6BG033560, gene_TRIDC7AG050180, gene_TRIDC7BG043590
Poaceae	Triticum aestivum	9	TraesCS3A02G214500.2, TraesCS3B02G245100.2 ... TraesCS3D02G217100.1, TraesCS6A02G187800.4, TraesCS6B02G216800.3, TraesCS6D02G178300.6, TraesCS7A02G358700.1, TraesCS7B02G268700.1, TraesCS7D02G364000.2
Poaceae	Zea mays	7	Zm00001eb161320_P002, Zm00001eb205080_P004 ... Zm00001eb243780_P001, Zm00001eb247180_P001, Zm00001eb336600_P001, Zm00001eb357700_P001, Zm00001eb384150_P001
Poaceae	Zoysia japonica	4	nbis-gene-10208, nbis-gene-29332, nbis-gene-29588 ... nbis-gene-9474
Poaceae	Zoysia macrostachya	3	Zma_g10605, Zma_g30709, Zma_g8167
Portulacaceae	Portulaca oleracea	6	evm.TU.LG05.2332, evm.TU.LG07.1096, evm.TU.LG07.1615 ... evm.TU.LG07.1616, evm.TU.LG15.1740, evm.TU.LG15.1745
Posidoniaceae	Posidonia oceanica	3	gene.Posoc03g19380, gene.Posoc03g21650, gene.Posoc09g06070
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_10_RagTag.1347 ... evm.TU.Scaffold_11_RagTag.1038, evm.TU.Scaffold_18_RagTag.648
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-14718, nbisL1-mrna-27761, nbisL1-mrna-7075
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-15516, nbisL1-mrna-5019, nbisL1-mrna-8075
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-12601, nbisL1-mrna-8030, nbisL1-mrna-8773
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000004l.67, evm.TU.utg000010l.123 ... evm.TU.utg000023l.72
Rhizophoraceae	Kandelia obovata	3	Maker00004088, Maker00008919, Maker00018738
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-16447, nbisL1-mrna-734, nbisL1-mrna-7404
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-17923, nbisL1-mrna-24322, nbisL1-mrna-8675
Salicaceae	Populus euphratica	6	populus_peu02604, populus_peu04981, populus_peu12674 ... populus_peu28666, populus_peu33506, populus_peu33509
Solanaceae	Lycium barbarum	4	gene-LOC132601443, gene-LOC132603710, gene-LOC132633450 ... gene-LOC132645676
Solanaceae	Solanum chilense	4	SOLCI003840200, SOLCI004096800, SOLCI005557600 ... SOLCI007425100
Solanaceae	Solanum pennellii	4	gene-LOC107007484, gene-LOC107015339, gene-LOC107021207 ... gene-LOC107023835
Tamaricaceae	Reaumuria soongarica	3	gene_10029, gene_3154, gene_3739
Tamaricaceae	Tamarix chinensis	3	TC01G2513, TC08G1710, TC10G2106
Zosteraceae	Zostera marina	4	Zosma05g12250.v3.1, Zosma05g25390.v3.1, Zosma06g00630.v3.1 ... Zosma06g11380.v3.1