Basic Information
Locus ID:
Ag6G01352
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
UBC34
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 64859663 | 64864851 | - | Ag6G01352 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.24 | 26,786.72 Da | 50.99 | 78.14 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 7 | 133 | 1.08637E-45 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 9 | 123 | 5.1E-21 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 6 | 153 | 3.67E-41 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 179 | 5.3E-58 | IPR016135 |
| SMART | SM00212 | ubc_7 | 8 | 162 | 3.1E-34 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 5 | 162 | 44.390091 | IPR000608 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17280.1 | ubiquitin-conjugating enzyme 34. | 0 |
| RefSeq | XP_017231118.1 | PREDICTED: ubiquitin-conjugating enzyme E2 34-like [Daucus carota subsp. sativus] | 0 |
| Q9SHI7 | Ubiquitin-conjugating enzyme E2 34 OS=Arabidopsis thaliana OX=3702 GN=UBC34 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1J6J5V1 | Ubiquitin-conjugating enzyme e2 34 OS=Nicotiana attenuata OX=49451 GN=UBC34_1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 75.077293 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 65.178001 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 71.517715 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 75.984901 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 72.099533 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 75.355988 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 68.061478 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 48.558929 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 99.839745 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 100.307281 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 92.753639 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 107.061691 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 107.099983 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 108.849533 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 109.293762 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 102.959541 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 131.318192 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 80.574287 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 93.519348 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 77.073151 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 78.564453 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 105.889954 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 94.678429 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 103.265877 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 101.599808 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 89.622314 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 97.978676 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 84.028091 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 98.117996 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 106.880997 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 77.348434 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 81.405487 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 103.93074 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 109.027863 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 86.821968 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 99.454262 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 91.332443 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 97.054001 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 71.6474 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 51.047947 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 48.431892 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 32.253487 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 58.04203 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 114.924347 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 107.347221 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 44.611637 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 95.585327 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 130.927643 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 120.930565 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 130.496841 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg25142 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5566 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028688 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g169090 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg1957, Sbi_jg34554 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2812 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011633 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73372, Sgl76895 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009189, gene:ENSEOMG00000035000 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0007030, CQ.Regalona.r1.9BG0007200 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30120480 |
| Apiaceae | Apium graveolens | 1 | Ag6G01352 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G005280, COCNU_08G003160 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716943 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.319.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G08465 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G17280.1, AT5G50430.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10009625m.g.v1.0, Thhalv10014520m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g15410.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g007030.2N, BniB03g027410.2N, BniB04g031700.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1097 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1137 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno10g00220, gene.Cymno14g03880 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0615s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g00350 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7496 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.238 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00028853 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G30575 |
| Poaceae | Echinochloa crus-galli | 4 | AH04.1393, AH06.617, BH06.682, CH06.697 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0512050, gene-QOZ80_6BG0463960 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0660830.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_027526 |
| Poaceae | Oryza coarctata | 2 | Oco11G004320, Oco12G004300 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g09330.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G072300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0405171, Pt_Chr0502911 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr11G021070, Chr14G003100, Chr21G002350 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G315300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG019300, gene_TRIDC7BG008970 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G157200.1, TraesCS7B02G061500.1 ... |
| Poaceae | Zea mays | 10 | Zm00001eb028890_P001, Zm00001eb171360_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-34941, nbis-gene-4958 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g29262, Zma_g31507 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG12.1643, evm.TU.LG19.159 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g00520 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.1452 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6722 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-16130, nbisL1-mrna-21086 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22665 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.5 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004194 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4114 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8309 |
| Salicaceae | Populus euphratica | 3 | populus_peu02949, populus_peu02961, populus_peu33846 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132633560, gene-LOC132645203 |
| Solanaceae | Solanum chilense | 2 | SOLCI002801300, SOLCI004799300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107015160, gene-LOC107021226 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.30798_chr10_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G0534 |
| Zosteraceae | Zostera marina | 1 | Zosma01g38060.v3.1 |