Basic Information
Locus ID:
Ag6G01348
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
DNA damage response protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 64780608 | 64783207 | + | Ag6G01348 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.52 | 36,220.87 Da | 61.84 | 74.92 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07344 | M48_yhfN_like | 92 | 115 | 4.85453E-4 | - |
| Pfam | PF08325 | WLM domain | 8 | 192 | 4.4E-54 | IPR013536 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 252 | 276 | 4.0E-6 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 285 | 310 | 9.73E-5 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 250 | 276 | 4.79E-6 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 243 | 287 | 8.8E-7 | - |
| SMART | SM00547 | zf_4 | 286 | 310 | 0.13 | IPR001876 |
| SMART | SM00547 | zf_4 | 251 | 275 | 0.0028 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 284 | 313 | 8.795135 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 247 | 278 | 8.535414 | IPR001876 |
| ProSiteProfiles | PS51397 | WLM domain profile. | 1 | 192 | 43.778049 | IPR013536 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 253 | 272 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 288 | 307 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 221 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 141 | 174 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 242 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55915.1 | zinc ion binding. | 0 |
| RefSeq | XP_017232698.1 | PREDICTED: DNA-dependent metalloprotease WSS1-like [Daucus carota subsp. sativus] | 0 |
| P38838 | DNA-dependent metalloprotease WSS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=WSS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A161XIA4 | DNA-dependent metalloprotease WSS1 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_007666 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 12.205059 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 14.878158 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 9.36821 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 10.506657 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 11.712214 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 4.746939 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 6.09292 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.059024 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 12.40219 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 12.364573 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 11.086228 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 11.592618 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 13.686995 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 12.115687 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.403977 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 2.761662 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 2.574771 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 7.00212 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 3.345236 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 20.051271 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 25.112022 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 5.305274 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 3.584802 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 4.902519 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 3.854739 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 3.572198 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 1.859957 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 3.587923 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 2.681267 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 5.736591 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.331664 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.796407 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 18.668064 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 15.846946 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 30.11301 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 15.815989 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 8.385727 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 11.949923 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 4.88759 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 8.944247 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.227804 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 117.350471 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 66.87307 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 9.073671 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 11.24825 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 111.190773 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 12.838869 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 12.287058 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 11.271885 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 10.262127 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg17956, jg24598 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12147 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah009024, Ah028602 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g090090 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg18482, Sbi_jg26803, Sbi_jg33766, Sbi_jg36882 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg4768, Seu_jg8454 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00011702, GOSA_00017358 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl23533, Sgl28662, Sgl73568, Sgl77119 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000005205, gene:ENSEOMG00000006799 ... |
| Amaranthaceae | Chenopodium quinoa | 8 | CQ.Regalona.r1.1BG0007060, CQ.Regalona.r1.1BG0007230 ... |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30130900, pistato.v30152750, pistato.v30155050 |
| Apiaceae | Apium graveolens | 2 | Ag2G01703, Ag6G01348 |
| Arecaceae | Cocos nucifera | 1 | scaffold019932G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718405 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.2527.V1.1, AsparagusV1_08.3169.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G11350, Ftri15G12980 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G55915.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10011589m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g41520.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB07g000470.2N, BniB07g056380.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1468 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1633 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g07820 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0780s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g39930 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.644, evm.TU.LG05.2019 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00014379, Pov_00028884, Pov_00041472 |
| Plumbaginaceae | Limonium bicolor | 5 | Lb0G37810, Lb1G07355, Lb7G34403, Lb7G34404, Lb7G34410 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.600, BH06.666, CH06.679 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0511890, gene-QOZ80_6BG0463790 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0660300.1 |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_016413, gene-QYE76_016415, gene-QYE76_027497 ... |
| Poaceae | Oryza coarctata | 2 | Oco11G004210, Oco12G004210 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g09170.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G070400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0405191, Pt_Chr0405782 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr11G021200, Chr14G003030, Chr21G002280 |
| Poaceae | Thinopyrum elongatum | 4 | Tel5E01G539700, Tel5E01G542400, Tel5E01G542700 ... |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC5AG016500, gene_TRIDC7AG018980 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS4D02G333700.1, TraesCS7A02G154800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb374280_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-4971 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29252 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG03.1210, evm.TU.LG12.549, evm.TU.LG23.287 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g14160, gene.Posoc03g16490 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_2_RagTag.1207, evm.TU.Scaffold_8_RagTag.1634 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-3869, nbisL1-mrna-8775 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-386 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15063 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.497, evm.TU.utg000018l.41 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003488, Maker00005018 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-12399, nbisL1-mrna-9383 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-23765, nbisL1-mrna-5514 |
| Salicaceae | Populus euphratica | 4 | populus_peu05997, populus_peu17818, populus_peu17819 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132633576, gene-LOC132636297 |
| Solanaceae | Solanum chilense | 1 | SOLCI003998300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007624 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.24641_chr08_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2488 |
| Zosteraceae | Zostera marina | 3 | Zosma03g06040.v3.1, Zosma1151g00020.v3.1 ... |