Basic Information
Locus ID:
Ag6G01341
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Polyketide cyclase dehydrase and lipid transport superfamily protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 63804853 | 63811693 | - | Ag6G01341 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.48 | 45,120.64 Da | 54.78 | 88.53 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01852 | START domain | 136 | 256 | 2.3E-13 | IPR002913 |
| SUPERFAMILY | SSF55961 | Bet v1-like | 100 | 288 | 1.1E-31 | - |
| Gene3D | G3DSA:3.30.530.20 | - | 78 | 289 | 2.1E-38 | IPR023393 |
| ProSiteProfiles | PS50848 | START domain profile. | 106 | 289 | 26.882219 | IPR002913 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 323 | 345 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 329 | 345 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55960.1 | Polyketide cyclase/dehydrase and lipid transport superfamily protein. | 0 |
| RefSeq | XP_017236789.1 | PREDICTED: uncharacterized protein LOC108210052 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A5J5BGX3 | START domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_022662 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 30.19833 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 29.510637 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 32.051342 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 27.635851 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 27.813753 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 36.804359 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 22.020975 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 19.531363 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 80.023163 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 83.422997 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 82.206192 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 67.260559 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 67.157845 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 61.439587 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 90.559303 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 66 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 91.227119 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 83.987144 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 76.112732 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 90.715012 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 96.294655 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 48.252235 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 46.873966 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 49.553284 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 50.200851 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 103.695152 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 73.264488 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 117.73896 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 97.178482 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 128.498947 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 118.28476 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 98.924225 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 143.11499 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 87.089096 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 140.795044 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 154.569275 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 172.377075 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 174.89006 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 200.626404 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 283.679474 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 316.829315 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 47.067657 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 69.621071 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 83.687798 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 79.781044 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 62.751202 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 71.641342 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 54.634464 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 62.027512 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 60.494404 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg26034 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6604 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028570 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26765, Sbi_jg33795 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8489 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011722 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73630, Sgl77093 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007646, gene:ENSEOMG00000036632 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0008020, CQ.Regalona.r1.9BG0008040 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30060650 |
| Apiaceae | Apium graveolens | 1 | Ag6G01341 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G019860 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720895 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.3555.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G15010 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G55960.1, AT3G13062.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10011546m.g.v1.0, Thhalv10020844m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g41570.v2.2, Sp3g11220.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB04g053590.2N, BniB07g026720.2N, BniB07g055850.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1025 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1074 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g08720 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g20990 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-669 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.1009 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00019869 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G22599 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.1648, BH07.1709, CH07.1535 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0079990.1 |
| Poaceae | Oryza coarctata | 2 | Oco03G009890, Oco04G010220 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g26860.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_K075600, gene-BS78_K143800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0403310, Pt_Chr0704452 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr06G011810, Chr06G011820, Chr09G011930, Chr13G013360 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G591800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG053510, gene_TRIDC1BG061310 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G364200.1, TraesCS1B02G381600.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb043190_P002, Zm00001eb082000_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-19047, nbis-gene-21006 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13496 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG12.533 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.85 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10270 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13125 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17733 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.933 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003337 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3078 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11487 |
| Salicaceae | Populus euphratica | 1 | populus_peu23793 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633610 |
| Solanaceae | Solanum chilense | 1 | SOLCI000515800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014722 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.21215_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1857 |
| Zosteraceae | Zostera marina | 1 | Zosma03g19630.v3.1 |