Basic Information
Locus ID:
Ag6G01333
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
transcriptional co-repressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 63340754 | 63352030 | + | Ag6G01333 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 98,052.10 Da | 55.34 | 66.92 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 607 | 895 | 1.81105E-63 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 648 | 685 | 4.6E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 692 | 729 | 2.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 773 | 808 | 3.1E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 858 | 895 | 0.021 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 36 | 1.3E-6 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 610 | 642 | 0.003 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 606 | 895 | 8.9E-66 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 744 | 895 | 7.7E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 591 | 743 | 2.4E-38 | IPR015943 |
| SMART | SM00320 | WD40_4 | 771 | 809 | 1.5E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 604 | 643 | 4.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 689 | 729 | 2.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 815 | 854 | 0.71 | IPR001680 |
| SMART | SM00320 | WD40_4 | 732 | 768 | 230.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 856 | 895 | 8.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 646 | 685 | 1.3E-9 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 9.1E-4 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 696 | 738 | 12.613797 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 863 | 895 | 11.523771 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 653 | 688 | 14.384962 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 863 | 895 | 12.246197 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 611 | 652 | 9.97376 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 778 | 810 | 9.472486 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 653 | 688 | 11.89286 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 696 | 731 | 10.07378 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.523964 | IPR006594 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 672 | 686 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 108 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 421 | 518 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 421 | 524 | - | - |
| Coils | Coil | Coil | 416 | 436 | - | - |
| Coils | Coil | Coil | 103 | 156 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32551.1 | LisH dimerisation motif;WD40/YVTN repeat-like-containing domain. LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors. | 0 |
| RefSeq | XP_017235575.1 | PREDICTED: transcriptional corepressor LEUNIG-like [Daucus carota subsp. sativus] | 0 |
| Q9FUY2 | Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana OX=3702 GN=LUG PE=1 SV=2 | 0 | |
| TrEMBL | A0A5B7ABU0 | Putative transcriptional corepressor LEUNIG isoform X1 OS=Davidia involucrata OX=16924 GN=Din_023651 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 56.855621 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 50.329479 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 40.979126 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 44.574383 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 43.478142 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 33.249245 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 38.157589 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 36.374821 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 71.619118 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 72.33741 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 71.890564 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 67.264229 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 59.855099 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 66.834923 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 30.754124 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 31.703859 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 31.720654 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 31.509241 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 19.876169 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 25.891594 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 28.718557 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 31.641804 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 43.670853 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 29.97559 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 29.636404 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 32.666935 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 26.227514 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 23.056124 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 31.609768 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 14.1985 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 14.050926 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 11.194943 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 22.685844 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 21.294762 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 19.698238 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 16.159529 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 14.411928 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 15.81282 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 28.136793 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 12.387192 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 9.325408 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 25.383636 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 32.600849 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 44.623753 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 42.72929 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 23.920132 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 39.701111 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 40.983437 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 35.833645 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 36.013935 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg23812, jg36775, jg4515, jg7842 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_10680, gene_17844 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014460 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_2g043470, BVRB_8g195540 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg24885, Sbi_jg30277, Sbi_jg43696, Sbi_jg8745 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg18209, Seu_jg19857 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007878, GOSA_00025537 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl42132, Sgl46900, Sgl65816, Sgl65848, Sgl70158 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000012377, gene:ENSEOMG00000015678 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.2AG0001900, CQ.Regalona.r1.2BG0002970 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30252930, pistato.v30255910 |
| Apiaceae | Apium graveolens | 3 | Ag2G01750, Ag6G01333, Ag6G02377 |
| Arecaceae | Cocos nucifera | 3 | COCNU_03G016390, COCNU_06G000550, COCNU_14G000010 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103717444, gene-LOC103721045, gene-LOC103722721 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.2203.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G09639 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G32551.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024343m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g30330.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g085900.2N, BniB03g009900.2N, BniB05g005520.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq04G2275, Ceq06G0701 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G2471, Cgl06G0723 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g13200, gene.Cymno06g02100 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g32950, gene.Thate09g13400 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG07.1022, evm.TU.LG07.1396 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00013700, Pov_00028813 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G04995, Lb5G29275 |
| Poaceae | Echinochloa crus-galli | 8 | AH02.2273, AH02.2274, AH02.446, BH02.2375, BH02.2376 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1AG0011820, gene-QOZ80_1AG0023900 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.3HG0240220.1, HORVU.MOREX.r3.3HG0270620.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_050459, gene-QYE76_053714, gene-QYE76_053715 |
| Poaceae | Oryza coarctata | 5 | Oco01G003190, Oco01G014210, Oco02G003220, Oco02G014440 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os01g08190.1, LOC_Os01g42260.1, LOC_Os01g42270.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G043200, gene-BS78_03G189500 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0200301, Pt_Chr0603269, Pt_Chr0603270, Pt_Chr0603285 ... |
| Poaceae | Sporobolus alterniflorus | 8 | Chr02G015850, Chr02G020010, Chr03G005460, Chr03G010670 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel3E01G211000, Tel3E01G371400, Tel3E01G374600 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC3AG015340, gene_TRIDC3AG032470 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS3A02G123100.1, TraesCS3A02G217500.7 ... |
| Poaceae | Zea mays | 4 | Zm00001eb161690_P001, Zm00001eb161700_P005 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-29302, nbis-gene-29546 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g10632, Zma_g7713, Zma_g8184 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG18.380, evm.TU.LG20.1405, evm.TU.LG23.1137 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g24580, gene.Posoc09g11810 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.375, evm.TU.Scaffold_4_RagTag.1230 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13162, nbisL1-mrna-27338 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-20641, nbisL1-mrna-3745 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-1242, nbisL1-mrna-16779 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.769, evm.TU.utg000033l.253 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000110, Maker00015019 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16520, nbisL1-mrna-9740 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-14750, nbisL1-mrna-986 |
| Salicaceae | Populus euphratica | 2 | populus_peu04822, populus_peu12834 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132643990, gene-LOC132644001 |
| Solanaceae | Solanum chilense | 1 | SOLCI006786400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023120 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.5619_chr03_-, gene_7980, gene_9305 |
| Tamaricaceae | Tamarix chinensis | 3 | TC01G1634, TC10G1624, TC12G1248 |
| Zosteraceae | Zostera marina | 2 | Zosma05g28810.v3.1, Zosma06g08660.v3.1 |