Basic Information
Locus ID:
Ag6G01296
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Probably inactive leucine-rich repeat receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 60731480 | 60735043 | - | Ag6G01296 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 105,966.36 Da | 38.99 | 106.28 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 476 | 535 | 4.1E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 405 | 464 | 2.7E-6 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 30 | 66 | 1.1E-10 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 736 | 945 | 3.7E-13 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 141 | 200 | 2.2E-8 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 70 | 129 | 1.4E-6 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 733 | 947 | 3.37E-25 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 50 | 325 | 2.61E-61 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 276 | 588 | 4.16E-60 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 476 | 613 | 4.9E-36 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 229 | 328 | 1.0E-29 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 138 | 228 | 1.3E-30 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 726 | 951 | 7.2E-26 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 421 | 475 | 6.5E-10 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 329 | 420 | 2.3E-24 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 29 | 137 | 3.9E-32 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 283 | 307 | 40.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 451 | 474 | 42.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 139 | 163 | 260.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 331 | 355 | 20.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 235 | 259 | 140.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 187 | 211 | 92.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 498 | 522 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 92 | 116 | 84.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 118 | 140 | 7.650349 | IPR001611 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 26 | 6.0 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 633 | 950 | 16.25906 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25790.1 | Leucine-rich receptor-like protein kinase family protein. | 0 |
| RefSeq | XP_017231663.1 | PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 [Daucus carota subsp. sativus] | 0 |
| O82318 | Leucine-rich repeat receptor-like serine/threonine-protein kinase SKM1 OS=Arabidopsis thaliana OX=3702 GN=SKM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166ERG1 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_007719 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.159767 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.256167 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.262418 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.10226 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.277847 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.315743 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.211629 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.077113 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 11.240045 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 11.843791 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 14.379137 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 18.795319 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 16.37088 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 10.310153 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.108349 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.643838 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 3.611676 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 3.480816 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 1.429722 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 4.095233 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 4.245079 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 14.975502 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 13.09774 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 12.452864 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 13.404587 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 5.118099 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 4.971762 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 10.042807 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 6.670155 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.410309 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.064521 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.917659 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.88822 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.236712 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.659828 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.607536 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.296764 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.188055 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 4.927597 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.876785 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.549749 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.21217 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.150575 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 4.009424 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.103697 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 7.504305 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 6.490057 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 5.730735 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 5.196681 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg23885, jg36707 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13219 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035005 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g032540 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg20936, Sbi_jg22850 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16709 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018184 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62272, Sgl66821 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000016543, gene:ENSEOMG00000049877 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0015390, CQ.Regalona.r1.2BG0017440 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30253900 |
| Apiaceae | Apium graveolens | 1 | Ag6G01296 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G000730 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710284 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G20857 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G25790.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001899m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g05550.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g032710.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G2072 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2266 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.823 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G26328 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.2316, evm.TU.LG07.1081 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.760 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13731 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4706 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9003 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.531 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014658 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3854 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7965 |
| Salicaceae | Populus euphratica | 3 | populus_peu04928, populus_peu05268, populus_peu12734 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635824 |
| Solanaceae | Solanum chilense | 1 | SOLCI003797100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028778 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.4745_chr03_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G1768 |