Basic Information
Locus ID:
Ag6G01210
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
chromatin remodeling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 56783072 | 56800715 | + | Ag6G01210 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.78 | 272,713.97 Da | 51.05 | 72.05 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15532 | PHD2_CHD_II | 82 | 123 | 4.91907E-22 | - |
| CDD | cd18659 | CD2_tandem | 695 | 748 | 9.12885E-15 | - |
| CDD | cd18660 | CD1_tandem | 645 | 680 | 5.36138E-14 | - |
| CDD | cd11660 | SANT_TRF | 1844 | 1888 | 5.25115E-6 | - |
| CDD | cd18793 | SF2_C_SNF | 1104 | 1231 | 3.56338E-51 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 806 | 1083 | 8.4E-60 | IPR000330 |
| Pfam | PF06465 | Domain of Unknown Function (DUF1087) | 1410 | 1444 | 1.1E-7 | IPR009463 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 698 | 748 | 2.1E-6 | IPR023780 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1110 | 1220 | 2.1E-17 | IPR001650 |
| Pfam | PF00628 | PHD-finger | 82 | 124 | 4.0E-9 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 76 | 127 | 1.42E-14 | IPR011011 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 687 | 736 | 1.01E-6 | IPR016197 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1016 | 1269 | 4.49E-61 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 775 | 1014 | 1.27E-58 | IPR027417 |
| SUPERFAMILY | SSF46689 | Homeodomain-like | 1840 | 1891 | 5.93E-6 | IPR009057 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 645 | 683 | 2.16E-9 | IPR016197 |
| Gene3D | G3DSA:2.40.50.40 | - | 685 | 749 | 2.7E-8 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 1024 | 1251 | 9.9E-183 | IPR027417 |
| Gene3D | G3DSA:1.10.10.60 | - | 1816 | 1913 | 7.4E-7 | - |
| Gene3D | G3DSA:3.40.50.10810 | - | 781 | 1023 | 9.9E-183 | IPR038718 |
| Gene3D | G3DSA:2.40.50.40 | - | 617 | 683 | 1.1E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 71 | 124 | 1.7E-18 | IPR013083 |
| SMART | SM01147 | DUF1087_2 | 1384 | 1449 | 2.5E-15 | IPR009463 |
| SMART | SM00490 | helicmild6 | 1135 | 1220 | 4.6E-22 | IPR001650 |
| SMART | SM00487 | ultradead3 | 786 | 990 | 4.8E-37 | IPR014001 |
| SMART | SM00298 | chromo_7 | 630 | 684 | 2.2E-9 | IPR000953 |
| SMART | SM00298 | chromo_7 | 694 | 751 | 0.0068 | IPR000953 |
| SMART | SM00249 | PHD_3 | 81 | 124 | 3.3E-13 | IPR001965 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 802 | 979 | 23.297655 | IPR014001 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 79 | 126 | 9.9261 | IPR019787 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1109 | 1268 | 16.987129 | IPR001650 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 631 | 679 | 10.602701 | IPR000953 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 82 | 123 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 155 | 172 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1446 | 1470 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2161 | 2175 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 187 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2357 | 2375 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 254 | 274 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1284 | 1304 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2309 | 2439 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 323 | 390 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2150 | 2191 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 324 | 364 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1630 | 1677 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2314 | 2328 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G44800.1 | chromatin remodeling 4. | 0 |
| RefSeq | XP_017235133.1 | PREDICTED: protein CHROMATIN REMODELING 4-like [Daucus carota subsp. sativus] | 0 |
| F4KBP5 | Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana OX=3702 GN=CHR4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166IGS6 | Protein PICKLE RELATED 1 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_003772 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 12.248469 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 10.25325 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 9.630257 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 11.294023 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 12.404161 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 10.737547 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 9.872657 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 9.07276 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 22.586374 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 18.896791 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 23.105865 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 21.257746 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 24.510933 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 16.816095 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 4.132956 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 3.963924 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 4.031475 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 6.154288 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 3.578944 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.430742 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 6.606432 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 6.986363 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 8.498997 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 6.774786 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 7.379214 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 8.024314 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 7.158973 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 6.037376 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 7.529166 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.499264 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.063204 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.838663 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 4.128427 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 5.614008 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.385063 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.059679 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.596547 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.823326 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 8.610443 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 5.389231 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.096065 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 2.220599 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 6.09262 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 12.341723 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 12.713594 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 2.430173 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 12.916638 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 9.961761 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 10.148258 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 9.35634 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg20920 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_6170, gene_6171 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah030129 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g163270 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg16043, Sbi_jg56949 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24706 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013711 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl71828, Sgl71829, Sgl75394 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000007979, gene:ENSEOMG00000036380 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0016160, CQ.Regalona.r1.7BG0020010 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30079060 |
| Apiaceae | Apium graveolens | 3 | Ag6G01210, Ag6G01213, Ag7G01102 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G012720, scaffold000767G000020 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103711432, gene-LOC103713520 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.1054.V1.1, AsparagusV1_03.1055.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G28642 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G44800.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000738m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g09650.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g016800.2N, BniB08g006390.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1410 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1572 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno13g03500, gene.Cymno13g03520 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0280s00012.v1.0, Dusal.0357s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g20990 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 5 | nbisL1-mrna-3062, nbisL1-mrna-3063, nbisL1-mrna-3064 ... |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.376 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00012913 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb4G24837, Lb4G24843, Lb4G24844 |
| Poaceae | Echinochloa crus-galli | 5 | AH03.3062, BH03.3235, BH03.3237, CH03.3433, Contig2801.2 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0143700.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_041223 |
| Poaceae | Oryza coarctata | 2 | Oco13G007840, Oco14G008360 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G284100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0304117 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G006020, Chr24G007750, Chr27G011240, Chr28G007090 |
| Poaceae | Zea mays | 1 | Zm00001eb105480_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-970 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g6469 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.235, evm.TU.LG04.517 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g08760 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.1011 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13480 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10871 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-9244, nbisL1-mrna-9245 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.276 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004176 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3668 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7694 |
| Salicaceae | Populus euphratica | 3 | populus_peu03372, populus_peu34221, populus_peu34222 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621471 |
| Solanaceae | Solanum chilense | 1 | SOLCI005700300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011005 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.5089_chr03_-, gene_16585 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2009 |
| Zosteraceae | Zostera marina | 1 | Zosma05g20100.v3.1 |