Basic Information
Locus ID:
Ag6G01183
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Target of Myb protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 55144051 | 55154159 | + | Ag6G01183 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 44,136.48 Da | 50.74 | 85.31 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03561 | VHS | 2 | 130 | 1.46748E-39 | - |
| Pfam | PF03127 | GAT domain | 193 | 263 | 1.3E-9 | IPR004152 |
| Pfam | PF00790 | VHS domain | 5 | 112 | 3.2E-22 | IPR002014 |
| SUPERFAMILY | SSF89009 | GAT-like domain | 140 | 265 | 1.91E-16 | - |
| SUPERFAMILY | SSF48464 | ENTH/VHS domain | 4 | 139 | 1.5E-34 | IPR008942 |
| Gene3D | G3DSA:1.20.58.160 | - | 181 | 273 | 8.4E-16 | IPR038425 |
| Gene3D | G3DSA:1.25.40.90 | - | 2 | 136 | 3.4E-38 | IPR008942 |
| SMART | SM00288 | VHS_2 | 2 | 134 | 2.6E-29 | IPR002014 |
| ProSiteProfiles | PS50179 | VHS domain profile. | 9 | 138 | 33.226242 | IPR002014 |
| ProSiteProfiles | PS50909 | GAT domain profile. | 176 | 264 | 13.06961 | IPR004152 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 382 | 399 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 362 | 399 | - | - |
| Coils | Coil | Coil | 271 | 291 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63640.1 | ENTH/VHS/GAT family protein. | 0 |
| RefSeq | XP_017236653.1 | PREDICTED: target of Myb protein 1 [Daucus carota subsp. sativus] | 0 |
| Q9FFQ0 | TOM1-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=TOL5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166ETT0 | TOM1-like protein 2 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_007809 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 9.583412 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 6.530301 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 7.521373 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 6.784699 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 7.756141 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 9.309941 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 5.777529 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.764727 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 26.758287 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 26.847372 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 29.286419 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 24.738783 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 25.419756 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 21.29624 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 42.746464 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 55.336906 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 50.532475 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 35.439758 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 40.939335 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 32.599819 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 28.460875 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 46.249142 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 46.620251 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 46.074791 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 41.199478 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 38.651733 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 39.560715 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 30.058144 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 40.66663 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.336743 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 6.989421 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 6.072705 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 17.174622 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 21.610319 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 17.64617 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 10.150472 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.445773 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 5.047441 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 14.164359 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 9.597039 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.576916 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 37.369724 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 38.025169 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 33.098782 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 40.408821 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 40.904358 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 39.524693 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 37.386749 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 30.605322 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 38.330124 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11542 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah006408, Ah006420 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g084130 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg16519, Sbi_jg61042 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg22806 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008099 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl24981, Sgl30129 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012408, gene:ENSEOMG00000029239 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0011890, CQ.Regalona.r1.4BG0012230 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30064470 |
| Apiaceae | Apium graveolens | 2 | Ag6G01183, Ag7G02118 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G021040 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103713758 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_07.1002.V1.1, AsparagusV1_Unassigned.311.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G32024 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G63640.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004212m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g26730.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g001810.2N, BniB06g011960.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq06G1412, Ceq09G0075 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1473 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno07g02380, gene.Cymno15g06760 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0090s00025.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g18940 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2548 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00014100, Pov_00029490 |
| Plumbaginaceae | Limonium bicolor | 6 | Lb0G36826, Lb1G07049, Lb1G07059, Lb4G21765, Lb4G21766 ... |
| Poaceae | Echinochloa crus-galli | 3 | AH08.64, BH08.15, CH08.181 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0614800, gene-QOZ80_8BG0642230 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0706330.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_033275 |
| Poaceae | Oryza coarctata | 2 | Oco15G000390, Oco16G000520 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g01740.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G009900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0402690 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr16G000160, Chr17G000130, Chr20G014080 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G554000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG045270, gene_TRIDC7BG037180 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G322800.1, TraesCS7B02G223700.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb174210_P001, Zm00001eb233260_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-41399, nbis-gene-51945 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g22351, Zma_g23498, Zma_g33446 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG16.903, evm.TU.LG22.1432 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.835 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-1019, nbisL1-mrna-999 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10118 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6510 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.698 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012618 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5162 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19668 |
| Salicaceae | Populus euphratica | 1 | populus_peu09024 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132613732 |
| Solanaceae | Solanum chilense | 1 | SOLCI007516800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005026 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.9887_chr06_+, gene_5566 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G2002 |
| Zosteraceae | Zostera marina | 5 | Zosma02g00910.v3.1, Zosma05g10750.v3.1, Zosma06g12210.v3.1 ... |