Basic Information
Locus ID:
Ag6G01169
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
protein serine/threonine kinase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 53897842 | 53903292 | + | Ag6G01169 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.64 | 115,069.23 Da | 32.63 | 98.82 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 784 | 983 | 4.3E-29 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 412 | 467 | 5.0E-9 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 22 | 67 | 4.1E-7 | IPR013210 |
| Pfam | PF13516 | Leucine Rich repeat | 293 | 307 | 1.2 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 363 | 377 | 1.4 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 505 | 565 | 2.0E-6 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 265 | 398 | 1.53E-18 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 783 | 1059 | 5.19E-48 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 98 | 587 | 4.0E-54 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 767 | 857 | 7.3E-10 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 859 | 1062 | 2.4E-35 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 184 | 256 | 7.6E-9 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 22 | 183 | 9.1E-38 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 257 | 620 | 5.9E-84 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 93 | 117 | 94.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 141 | 165 | 160.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 213 | 236 | 370.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 454 | 479 | 47.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 528 | 551 | 230.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 291 | 313 | 210.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 314 | 338 | 51.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 505 | 527 | 140.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 189 | 212 | 170.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 780 | 1062 | 27.877207 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 293 | 315 | 7.373124 | IPR001611 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20940.1 | Leucine-rich receptor-like protein kinase family protein. | 0 |
| RefSeq | XP_017236274.1 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g20940 [Daucus carota subsp. sativus] | 0 |
| C0LGQ9 | LRR receptor-like serine/threonine-protein kinase GHR1 OS=Arabidopsis thaliana OX=3702 GN=GHR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A161XIM8 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_007836 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 3.857722 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 2.858722 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.306876 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 1.992416 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 1.995064 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.262801 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.723584 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.571007 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 62.566551 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 65.567619 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 74.408478 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 57.348679 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 47.583328 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 39.715996 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 11.461835 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 20.552164 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 18.929863 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 9.251999 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 12.819945 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.78615 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 4.624327 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 11.455604 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 12.674739 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 15.203489 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 12.720153 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 14.447719 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 9.983294 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 5.785297 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 17.080305 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.100672 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.698657 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.131106 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.494722 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 9.101717 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.948119 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.196238 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.321969 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.200275 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 32.448433 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 5.001691 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.598947 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.333089 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.244779 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.330394 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.778257 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.487956 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.111121 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 18.759825 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 16.192354 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 16.377256 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg20827, jg22328 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16176 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g220510 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11475, Sbi_jg46404 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20726 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005258 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55880, Sgl61071 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013144, gene:ENSEOMG00000037254 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0010770, CQ.Regalona.r1.9AG0013850 |
| Apiaceae | Apium graveolens | 1 | Ag6G01169 |
| Arecaceae | Cocos nucifera | 2 | COCNU_14G008910, scaffold013743G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103710493, gene-LOC103717919 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_06.1946.V1.1, AsparagusV1_07.3470.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G16277 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G20940.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10024279m.g.v1.0, Thhalv10024290m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g19020.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g022150.2N, BniB05g016060.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0566 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0670 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno13g02650, gene.Cymno17g04260 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g19370 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11391 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.479 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00038561 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G16865 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.213, BH03.277, CH03.340 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0555450, gene-QOZ80_7BG0586450 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0153670.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_042472 |
| Poaceae | Oryza coarctata | 2 | Oco13G001380, Oco14G001450 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g05190.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G032600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0303516 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr19G017990, Chr24G001570 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G467900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG032760, gene_TRIDC2BG039460 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G253500.1, TraesCS2B02G273100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb117610_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-35791, nbis-gene-35793, nbis-gene-51793 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g4727, Zma_g5962 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG06.1920 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g05450 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.983 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16833 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13067 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17281 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000025l.140 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012330 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8622 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22988 |
| Salicaceae | Populus euphratica | 2 | populus_peu00066, populus_peu17139 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132625180, gene-LOC132631564 |
| Solanaceae | Solanum chilense | 2 | SOLCI000502100, SOLCI006826400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107011286, gene-LOC107011652 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.13108_chr07_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G0590 |
| Zosteraceae | Zostera marina | 2 | Zosma03g23840.v3.1, Zosma05g19560.v3.1 |