Basic Information
Locus ID:
Ag6G01158
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 53216544 | 53220927 | + | Ag6G01158 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.78 | 42,461.84 Da | 48.73 | 79.89 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 60 | 1.19E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 130 | 8.6E-7 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00755.1 | F-box family protein. | 0 |
| RefSeq | XP_017243741.1 | PREDICTED: F-box protein At4g00755-like [Daucus carota subsp. sativus] | 0 |
| Q8LG03 | F-box protein At4g00755 OS=Arabidopsis thaliana OX=3702 GN=At4g00755 PE=2 SV=1 | 0 | |
| TrEMBL | A0A165XCY0 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014599 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 36.379898 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 25.444151 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 29.804863 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 26.56764 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 25.629244 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 29.861177 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 30.187523 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 28.108913 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 66.744347 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 62.521492 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 68.025093 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 71.321999 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 59.387924 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 52.043804 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 49.991959 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 55.36977 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 49.632671 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 29.601044 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 36.050217 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 28.942787 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 37.65564 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 58.610439 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 51.690342 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 47.693996 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 51.617569 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 38.826984 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 35.296421 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 37.972481 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 41.535358 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 27.355301 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 27.610313 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 33.573864 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 38.807652 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 40.22467 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 31.162045 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 29.029121 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 15.133815 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 23.939278 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 24.088039 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 17.556618 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 14.657518 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 49.948643 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 35.927761 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 26.872816 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 31.181337 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 44.068363 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 35.837532 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 41.938385 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 54.874092 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 37.402042 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg14025, jg2326, jg26852, jg29309, jg29311, jg33998 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3180 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023081 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4419, Sbi_jg49334 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5848 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000369 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11166, Sgl16567 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013603, gene:ENSEOMG00000035475 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0004940, CQ.Regalona.r1.2BG0024240 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30003780 |
| Apiaceae | Apium graveolens | 2 | Ag5G01099, Ag6G01158 |
| Arecaceae | Cocos nucifera | 3 | COCNU_07G007060, COCNU_10G005290, COCNU_10G005300 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103711141, gene-LOC103716873 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_04.3043.V1.1, AsparagusV1_08.386.V1.1 ... |
| Asteraceae | Flaveria trinervia | 5 | Ftri11G24788, Ftri11G29417, Ftri5G21596, Ftri5G24336 ... |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G00755.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028752m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g00750.v2.2 |
| Brassicaceae | Brassica nigra | 7 | BniB08g041610.2N, BniB08g042030.2N, BniB08g042880.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq02G2087, Ceq05G0624, Ceq05G0625 |
| Casuarinaceae | Casuarina glauca | 4 | Cgl02G2160, Cgl05G0642, Cgl05G0643, Cgl05G0644 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno16g04840 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g05090 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.934 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00032173, Pov_00032174, Pov_00032175, Pov_00032407 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G10937 |
| Poaceae | Echinochloa crus-galli | 11 | AH01.5079, AH01.654, AH08.714, BH01.5216, BH01.69, BH02.1689 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_3AG0207290, gene-QOZ80_3AG0231100 ... |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.3HG0240630.1, HORVU.MOREX.r3.4HG0413710.2 ... |
| Poaceae | Lolium multiflorum | 11 | gene-QYE76_020852, gene-QYE76_020855, gene-QYE76_020908 ... |
| Poaceae | Oryza coarctata | 4 | Oco05G000990, Oco05G029600, Oco06G000960, Oco06G030570 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g02560.1, LOC_Os03g64360.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_01G001100, gene-BS78_01G505900 ... |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0100699, Pt_Chr0100789, Pt_Chr0200336, Pt_Chr0202366 ... |
| Poaceae | Sporobolus alterniflorus | 7 | Chr01G038770, Chr04G006350, Chr04G033080, Chr07G005260 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel3E01G214000, Tel4E01G584000, Tel5E01G898400 ... |
| Poaceae | Triticum dicoccoides | 8 | gene_TRIDC3BG020450, gene_TRIDC4AG071390 ... |
| Poaceae | Triticum aestivum | 13 | TraesCS3B02G145100.1, TraesCS3D02G127000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb001130_P002 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-16821, nbis-gene-3148, nbis-gene-51284 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g2238, Zma_g22654, Zma_g2307 |
| Portulacaceae | Portulaca oleracea | 8 | evm.TU.LG03.2545, evm.TU.LG03.510, evm.TU.LG04.2347 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g02680 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.1346, evm.TU.Scaffold_5_RagTag.316 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-10893, nbisL1-mrna-12644 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-18509, nbisL1-mrna-18861 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-10487, nbisL1-mrna-12918 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000006l.543, evm.TU.utg000010l.346 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009017, Maker00013506 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1053, nbisL1-mrna-9225 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20621, nbisL1-mrna-6992 |
| Salicaceae | Populus euphratica | 2 | populus_peu27780, populus_peu31716 |
| Solanaceae | Lycium barbarum | 5 | gene-LOC132631844, gene-LOC132631846, gene-LOC132633196 ... |
| Solanaceae | Solanum chilense | 3 | SOLCI000023800, SOLCI002066500, SOLCI003880900 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107001904, gene-LOC107012395, gene-LOC107032042 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.15219_chr06_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G2161 |
| Zosteraceae | Zostera marina | 1 | Zosma01g07580.v3.1 |