Basic Information
Locus ID:
Ag6G01149
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 52784190 | 52786355 | + | Ag6G01149 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 37,869.63 Da | 60.41 | 81.79 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 36 | 79 | 1.1E-8 | IPR001810 |
| Pfam | PF13516 | Leucine Rich repeat | 219 | 238 | 0.12 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 64 | 257 | 8.04E-17 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 31 | 81 | 6.9E-11 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 147 | 288 | 4.7E-14 | IPR032675 |
| SMART | SM00256 | fbox_2 | 40 | 81 | 0.0049 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 34 | 81 | 10.954661 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05460.1 | RNI-like superfamily protein. | 0 |
| RefSeq | XP_017255239.1 | PREDICTED: F-box protein SKIP19-like [Daucus carota subsp. sativus] | 0 |
| Q9M0U9 | F-box protein SKIP19 OS=Arabidopsis thaliana OX=3702 GN=SKIP19 PE=1 SV=1 | 0 | |
| TrEMBL | A0A161ZZ73 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_019995 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 11.582685 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 8.559091 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.459455 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 8.071795 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 6.150819 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 6.555583 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 5.778611 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 6.370877 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 12.233089 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 11.33536 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 10.039358 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 13.585582 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 9.79555 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 9.382207 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 6.473347 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 6.190648 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 9.608563 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 5.352096 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 5.755133 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.155915 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 6.697513 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 10.703594 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 10.352118 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 10.384616 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 9.914913 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 7.050879 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 8.100181 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 7.555275 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 8.814165 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 5.129581 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.753404 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 5.057983 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 8.577728 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 8.265401 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 5.54613 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.701409 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 5.304509 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 5.40164 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 6.291931 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 4.347309 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.517723 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 4.297486 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 6.45651 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 7.490627 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 8.190378 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 4.645813 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 6.678079 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 15.793644 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 11.239366 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 12.554133 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 7 | jg20796, jg20799, jg20800, jg20801, jg25023, jg25038 ... |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_22563, gene_23874 |
| Amaranthaceae | Atriplex hortensis | 5 | Ah008894, Ah016403, Ah035513, Ah035515, Ah035516 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_2g027120, BVRB_2g027130, BVRB_8g187380 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg21812, Sbi_jg21814, Sbi_jg22000, Sbi_jg22002 ... |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg15933, Seu_jg15935, Seu_jg2147 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00018102, GOSA_00018103 |
| Amaranthaceae | Suaeda glauca | 16 | Sgl13279, Sgl27040, Sgl45215, Sgl45233, Sgl45234, Sgl45243 ... |
| Amaranthaceae | Chenopodium album | 9 | gene:ENSEOMG00000009447, gene:ENSEOMG00000016860 ... |
| Amaranthaceae | Chenopodium quinoa | 7 | CQ.Regalona.r1.2AG0019000, CQ.Regalona.r1.2AG0019010 ... |
| Apiaceae | Apium graveolens | 7 | Ag11G04938, Ag6G01145, Ag6G01149, Ag6G01151, Ag6G01220 ... |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103705624 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.3.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri14G01611, Ftri14G18342, Ftri14G20505, Ftri15G03599 |
| Brassicaceae | Arabidopsis thaliana | 8 | AT4G03630.1, AT4G03635.1, AT4G05460.1, AT4G05470.1 ... |
| Brassicaceae | Eutrema salsugineum | 9 | Thhalv10009631m.g.v1.0, Thhalv10010638m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp1g06280.v2.2, Sp6g03620.v2.2, SpUn0416_0010.v2.2 ... |
| Brassicaceae | Brassica nigra | 23 | BniB01g023450.2N, BniB02g003630.2N, BniB03g002270.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 5 | Ceq01G1362, Ceq04G0101, Ceq04G0102, Ceq04G0106, Ceq04G0107 |
| Casuarinaceae | Casuarina glauca | 8 | Cgl04G0068, Cgl04G0158, Cgl04G0159, Cgl04G0160, Cgl04G0162 ... |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g05820 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0322s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g03640 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4096 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.158 |
| Plantaginaceae | Plantago ovata | 16 | Pov_00009428, Pov_00015414, Pov_00015417, Pov_00033074 ... |
| Plumbaginaceae | Limonium bicolor | 15 | Lb1G07003, Lb2G09700, Lb2G11614, Lb2G12142, Lb2G12143 ... |
| Poaceae | Echinochloa crus-galli | 43 | AH07.1564, AH07.1568, AH08.555, AH08.557, AH08.565, AH08.566 ... |
| Poaceae | Eleusine coracana subsp. coracana | 14 | gene-QOZ80_2AG0111110, gene-QOZ80_8AG0620240 ... |
| Poaceae | Hordeum vulgare | 16 | HORVU.MOREX.r3.1HG0005410.1, HORVU.MOREX.r3.2HG0103950.1 ... |
| Poaceae | Lolium multiflorum | 43 | gene-QYE76_001794, gene-QYE76_006656, gene-QYE76_009677 ... |
| Poaceae | Oryza coarctata | 8 | Oco03G008760, Oco03G008780, Oco04G009170, Oco04G009200 ... |
| Poaceae | Oryza sativa | 18 | LOC_Os02g21240.1, LOC_Os02g21260.1, LOC_Os08g09220.1 ... |
| Poaceae | Paspalum vaginatum | 16 | gene-BS78_03G060000, gene-BS78_07G074600 ... |
| Poaceae | Puccinellia tenuiflora | 24 | Pt_Chr0200734, Pt_Chr0202455, Pt_Chr0202457, Pt_Chr0202464 ... |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G030750, Chr15G022190, Chr16G002550, Chr17G002250 |
| Poaceae | Thinopyrum elongatum | 24 | Tel1E01G071900, Tel1E01G232800, Tel2E01G038100 ... |
| Poaceae | Triticum dicoccoides | 34 | gene_TRIDC1AG003490, gene_TRIDC1AG018470 ... |
| Poaceae | Triticum aestivum | 70 | TraesCS1A02G033100.1, TraesCS1A02G128000.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb354560_P001, Zm00001eb413420_P001 ... |
| Poaceae | Zoysia japonica | 6 | nbis-gene-27552, nbis-gene-38890, nbis-gene-38891 ... |
| Poaceae | Zoysia macrostachya | 7 | Zma_g12646, Zma_g15926, Zma_g22606, Zma_g22607, Zma_g22610 ... |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG02.2666, evm.TU.LG04.1140, evm.TU.LG05.1681 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g05100 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.944 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-16716, nbisL1-mrna-16792 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10238 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17250 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000025l.115 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012339 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8650 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9166 |
| Salicaceae | Populus euphratica | 1 | populus_peu17631 |
| Solanaceae | Lycium barbarum | 12 | gene-LOC132609366, gene-LOC132609371, gene-LOC132609381 ... |
| Solanaceae | Solanum chilense | 4 | SOLCI001177800, SOLCI001691500, SOLCI006070400 ... |
| Solanaceae | Solanum pennellii | 12 | gene-LOC107014973, gene-LOC107026818, gene-LOC107027046 ... |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.18317_chr09_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G1902 |
| Zosteraceae | Zostera marina | 6 | Zosma03g04230.v3.1, Zosma06g01200.v3.1, Zosma06g11830.v3.1 ... |