Basic Information
Locus ID:
Ag6G01124
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Protein of unknown function (DUF1365)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 51308645 | 51314435 | + | Ag6G01124 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.64 | 35,186.85 Da | 44.95 | 83.06 | -0.24 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30130.1 | 0 | |
| RefSeq | XP_017232144.1 | PREDICTED: uncharacterized protein LOC108206378 isoform X1 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A166EW75 | DUF1365 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_007885 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 17.636148 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 18.396198 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 16.081568 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 18.635553 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 16.770805 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 19.901577 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 11.406173 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 8.254971 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 58.643257 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 48.63097 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 58.674576 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 39.175961 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 43.716755 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 45.436878 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 47.921379 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 38.972656 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 42.559334 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 66.893234 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 52.47073 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 60.004818 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 64.051613 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 29.415331 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 33.027538 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 39.999779 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 35.033848 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 47.692478 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 53.731998 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 42.87685 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 50.142872 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 35.188629 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 60.295547 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 50.59663 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 43.756664 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 28.754539 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 41.461014 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 36.558876 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 33.573364 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 30.905529 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 51.834526 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 47.300045 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 50.816708 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 36.372372 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 41.668671 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 38.955688 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 38.673779 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 51.356091 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 53.069309 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 48.016758 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 41.322445 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 49.90102 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg20771 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22523 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah016269 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg50632 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2181 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00019209 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl44919, Sgl45046, Sgl49682, Sgl49816 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009140, gene:ENSEOMG00000031476 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0009510, CQ.Regalona.r1.8BG0010330 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30069140, pistato.v30069540 |
| Apiaceae | Apium graveolens | 3 | Ag6G01124, Ag8G00772, AgUnG00140 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G020350 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC113462627 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.3393.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G25191 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G30130.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10008271m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g25990.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g016270.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0268 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0378 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g03790 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0260s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g26460 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.109 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00022213, Pov_00038490 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G25167, Lb5G29317 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.250, BH03.327, CH03.396 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0555810, gene-QOZ80_7BG0586780 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0202270.1 |
| Poaceae | Oryza coarctata | 2 | Oco13G001580, Oco14G001670 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g05870.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G036300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0303542 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr24G001400, Chr28G001000 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G844600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG070310, gene_TRIDC2BG076020 |
| Poaceae | Triticum aestivum | 4 | TraesCS1A02G123800.1.cds1, TraesCS2A02G499600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb300160_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-51834 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g5990 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG10.30 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g07720 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.801 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24981 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12969 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19190 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000022l.84 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016209 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-81 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10326 |
| Salicaceae | Populus euphratica | 3 | populus_peu24348, populus_peu33580, populus_peu33581 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132609577, gene-LOC132609580 |
| Solanaceae | Solanum chilense | 1 | SOLCI003786000 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10528 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G1046 |
| Zosteraceae | Zostera marina | 1 | Zosma05g29950.v3.1 |