Basic Information
Locus ID:
Ag6G01122
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 51010155 | 51011978 | - | Ag6G01122 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.64 | 46,402.00 Da | 32.76 | 81.08 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 57 | 93 | 6.6E-5 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 196 | 241 | 1.4E-11 | IPR006652 |
| SUPERFAMILY | SSF117281 | Kelch motif | 105 | 357 | 1.09E-43 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 53 | 132 | 8.11E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 56 | 92 | 1.5E-5 | - |
| Gene3D | G3DSA:2.120.10.80 | - | 98 | 378 | 4.4E-36 | IPR015915 |
| SMART | SM00256 | fbox_2 | 57 | 97 | 8.6E-5 | IPR001810 |
| SMART | SM00612 | kelc_smart | 256 | 304 | 19.0 | IPR006652 |
| SMART | SM00612 | kelc_smart | 159 | 207 | 0.17 | IPR006652 |
| SMART | SM00612 | kelc_smart | 208 | 255 | 8.9E-5 | IPR006652 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30090.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_017235142.1 | PREDICTED: F-box/kelch-repeat protein At1g30090-like [Daucus carota subsp. sativus] | 0 |
| Q9C6Z0 | F-box/kelch-repeat protein At1g30090 OS=Arabidopsis thaliana OX=3702 GN=At1g30090 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5B6YGA6 | F-box domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_000242 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 11.733115 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 16.083603 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 12.806667 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 16.236403 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 13.548292 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 19.507755 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 15.456961 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 13.520627 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 11.857048 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 12.742757 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 10.388476 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 7.863471 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 14.395174 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 14.044132 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 20.646967 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 29.74156 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 19.922199 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 47.802662 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 42.225136 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 36.928001 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 37.708946 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 16.259369 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 15.260644 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 18.110821 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 22.118298 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 17.051895 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 23.584753 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 20.296797 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 17.356112 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 23.09757 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 25.156685 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 25.256653 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 51.320374 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 21.751127 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 49.72316 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 41.234993 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 37.735794 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 40.911316 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 8.748776 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 14.294199 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 20.210098 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 22.898287 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 34.584831 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 34.418304 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 21.653158 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 26.110802 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 25.899006 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 20.625746 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 12.464329 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 13.981856 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg20763, jg25017 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_236 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah017853 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g181440 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg10316 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg22096 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005981 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl71006, Sgl74598 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011940, gene:ENSEOMG00000032007 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0003850, CQ.Regalona.r1.8BG0003990 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30069580, pistato.v30251820 |
| Apiaceae | Apium graveolens | 2 | Ag11G04916, Ag6G01122 |
| Arecaceae | Cocos nucifera | 5 | COCNU_01G008690, COCNU_06G020330, COCNU_11G002450 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103695743, gene-LOC103707095, gene-LOC103715962 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.1877.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G13236, Ftri5G03235 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G30090.1, AT2G24540.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000205m.g.v1.0, Thhalv10007818m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g25950.v2.2, Sp4g03540.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g022520.2N, BniB04g045430.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq04G0271, Ceq04G2181 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G0383, Cgl04G2374 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g07780, gene.Cymno06g07000 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g26470, gene.Thate04g11040 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-344, nbisL1-mrna-873 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG07.1595, evm.TU.LG08.1032 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00013133 |
| Poaceae | Echinochloa crus-galli | 5 | AH03.253, AH06.2511, BH03.329, BH06.2314, CH06.2539 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_6BG0500450, gene-QOZ80_7AG0555820 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0202250.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_036491, gene-QYE76_042526 |
| Poaceae | Oryza coarctata | 4 | Oco11G014300, Oco12G014460, Oco13G001590, Oco14G001680 |
| Poaceae | Oryza sativa | 2 | LOC_Os06g44500.1, LOC_Os07g05880.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G036400, gene-BS78_10G213000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0404216 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G031250, Chr05G008980, Chr10G019440, Chr11G003190 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G844700, Tel7E01G848100, Tel7E01G848400 |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC1AG023880, gene_TRIDC2AG070320 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS2A02G499700.1.cds1, TraesCS2D02G499800.1.cds1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb300170_P001, Zm00001eb389480_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-35775 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30928, Zma_g4739 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.1710, evm.TU.LG14.938, evm.TU.LG16.1370 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g14090, gene.Posoc03g16270 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.805 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13518, nbisL1-mrna-24984 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10840, nbisL1-mrna-19151 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-19192, nbisL1-mrna-9209 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000004l.87, add.evm.TU.utg000022l.44 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00004130, Maker00016216 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16818, nbisL1-mrna-18233 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10323, nbisL1-mrna-7733 |
| Salicaceae | Populus euphratica | 2 | populus_peu04598, populus_peu12319 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616188 |
| Solanaceae | Solanum chilense | 1 | SOLCI003649300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009056 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G1847 |
| Zosteraceae | Zostera marina | 1 | Zosma03g06020.v3.1 |