Basic Information
Locus ID:
Ag6G01111
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
FLS2
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 49952975 | 49957067 | - | Ag6G01111 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.01 | 129,138.15 Da | 33.97 | 109.84 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 873 | 1152 | 3.35953E-82 | - |
| Pfam | PF13855 | Leucine rich repeat | 384 | 442 | 3.5E-8 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 33 | 70 | 1.9E-11 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 868 | 1147 | 2.9E-40 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 721 | 758 | 9.0E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 551 | 611 | 2.6E-10 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 76 | 396 | 1.1E-62 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 475 | 795 | 9.35E-60 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 845 | 1149 | 2.97E-67 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 946 | 1175 | 6.8E-53 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 507 | 794 | 7.5E-84 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 829 | 945 | 2.0E-24 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 182 | 277 | 9.2E-34 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 430 | 505 | 7.6E-15 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 278 | 427 | 3.7E-40 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 30 | 181 | 3.1E-42 | IPR032675 |
| SMART | SM00220 | serkin_6 | 867 | 1156 | 1.1E-30 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 720 | 743 | 61.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 238 | 262 | 55.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 334 | 358 | 49.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 574 | 598 | 63.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 696 | 719 | 70.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 430 | 454 | 43.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 94 | 118 | 15.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 382 | 406 | 150.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 478 | 502 | 120.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 286 | 310 | 170.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 744 | 768 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 526 | 550 | 34.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 288 | 309 | 7.034293 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 867 | 1152 | 35.368229 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 992 | 1004 | - | IPR008271 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 601 | 614 | 9.4E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 744 | 757 | 9.4E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1156 | 1184 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G46330.1 | Leucine-rich receptor-like protein kinase family protein. Encodes a leucine-rich repeat serine/threonine protein kinase that is expressed ubiquitously. FLS2 is involved in MAP kinase signalling relay involved in innate immunity. Essential in the perception of flagellin, a potent elicitor of the defense response. FLS2 is directed for degradation by the bacterial ubiquitin ligase AvrPtoB. | 0 |
| RefSeq | XP_017236668.1 | PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2 [Daucus carota subsp. sativus] | 0 |
| Q0JA29 | LRR receptor-like serine/threonine-protein kinase FLS2 OS=Oryza sativa subsp. japonica OX=39947 GN=FLS2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A162AX27 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_007900 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.165538 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.0905 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.124136 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.105791 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.092742 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.185279 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.131114 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.131318 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 1.070427 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.547329 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.486984 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.504145 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0.60174 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.426526 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.495598 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.319996 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.238617 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.781525 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.401266 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.884581 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.827759 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.69951 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.1096 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.61868 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.387855 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.499867 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.858044 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.263862 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.578038 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.169818 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.10507 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.280255 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.654606 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.319117 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.52154 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.219671 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.199229 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.352171 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.580301 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.594504 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.512552 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 7.090635 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 29.604919 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.627725 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 2.090148 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 4.219031 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.550616 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.319362 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.140053 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.20455 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_545 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah016577, Ah016595 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022985 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl45319, Sgl50103 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000011016, gene:ENSEOMG00000033233 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.8AG0008760, CQ.Regalona.r1.8BG0009090 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30063970, pistato.v30070100 |
| Apiaceae | Apium graveolens | 4 | Ag6G01110, Ag6G01111, Ag7G00866, Ag7G00867 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G018210 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103697992 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.2277.V1.1, AsparagusV1_06.35.V1.1 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G46330.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000746m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g11180.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g011060.2N, BniB04g015820.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq04G0359, Ceq04G0360 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0467 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g04100 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g00180 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.671 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G14589 |
| Poaceae | Echinochloa crus-galli | 2 | BH09.2514, CH09.2744 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0303720, gene-QOZ80_4BG0334630 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0195450.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_047795 |
| Poaceae | Oryza coarctata | 2 | Oco07G016100, Oco08G015590 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g52780.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G231100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0105934, Pt_Chr0301209 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr25G002990, Chr30G002950 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G781400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG065670, gene_TRIDC2BG070540 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G461800.1, TraesCS2B02G483400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb070510_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g21974 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG03.63 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g05640 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.873 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16634 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5470 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000025l.79 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8687 |
| Salicaceae | Populus euphratica | 1 | populus_peu09863 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622079 |
| Solanaceae | Solanum chilense | 2 | SOLCI001783100, SOLCI001783300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107008930, gene-LOC107010815 |