Basic Information
Locus ID:
Ag6G01096
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 49375451 | 49379940 | + | Ag6G01096 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.56 | 67,597.29 Da | 57.34 | 76.75 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00439 | Bromodomain | 116 | 199 | 3.2E-21 | IPR001487 |
| SUPERFAMILY | SSF47370 | Bromodomain | 100 | 214 | 1.13E-33 | IPR036427 |
| Gene3D | G3DSA:1.20.920.10 | - | 88 | 223 | 2.6E-35 | IPR036427 |
| SMART | SM00297 | bromo_6 | 103 | 213 | 8.5E-27 | IPR001487 |
| ProSiteProfiles | PS50014 | Bromodomain profile. | 122 | 194 | 18.8606 | IPR001487 |
| PRINTS | PR00503 | Bromodomain signature | 125 | 138 | 1.3E-16 | IPR001487 |
| PRINTS | PR00503 | Bromodomain signature | 141 | 157 | 1.3E-16 | IPR001487 |
| PRINTS | PR00503 | Bromodomain signature | 175 | 194 | 1.3E-16 | IPR001487 |
| PRINTS | PR00503 | Bromodomain signature | 157 | 175 | 1.3E-16 | IPR001487 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 362 | 381 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 362 | 386 | - | - |
| Coils | Coil | Coil | 458 | 489 | - | - |
| Coils | Coil | Coil | 498 | 518 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G46550.1 | DNA-binding bromodomain-containing protein. | 0 |
| RefSeq | XP_017235193.1 | PREDICTED: transcription factor GTE10-like isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q9LS28 | Transcription factor GTE12 OS=Arabidopsis thaliana OX=3702 GN=GTE12 PE=2 SV=2 | 0 | |
| TrEMBL | A0A161XIV0 | Bromo domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_007916 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 15.933517 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 11.423697 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 10.416116 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 10.937795 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 11.56972 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 10.402873 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 8.390841 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.368392 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 28.382856 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 23.430214 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 30.074703 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 30.069477 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 27.341412 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 23.769451 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 10.406348 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 11.759453 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 13.818026 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 16.697472 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 15.832348 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 15.58869 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 15.706347 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 17.92844 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 17.922262 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 17.803064 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 18.45273 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 19.029507 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 24.446684 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 19.725769 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 18.640896 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 5.044676 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 9.795259 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 7.63275 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 7.815559 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 12.159133 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 7.6243 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.881834 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.908284 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.304923 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 12.505318 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 9.156372 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 7.279193 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 13.523361 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 17.912914 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 41.961994 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 39.926323 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 17.658445 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 36.043434 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 27.478966 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 19.834053 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 21.920671 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg20691 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22407 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah016705 |
| Amaranthaceae | Salicornia bigelovii | 9 | Sbi_jg15754, Sbi_jg40281, Sbi_jg40296, Sbi_jg50275 ... |
| Amaranthaceae | Salicornia europaea | 5 | Seu_jg13767, Seu_jg1860, Seu_jg1875, Seu_jg1876, Seu_jg1877 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00011457, GOSA_00011458, GOSA_00011459 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl41668 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010899, gene:ENSEOMG00000034929 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0008240, CQ.Regalona.r1.8BG0008840 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30071030 |
| Apiaceae | Apium graveolens | 5 | Ag4G01483, Ag4G01484, Ag5G02180, Ag6G01096, Ag7G00859 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G012290, scaffold000006G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103707184 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.1149.V1.1, AsparagusV1_07.3811.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G16699, Ftri18G30349 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G46550.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000859m.g.v1.0, Thhalv10011031m.g.v1.0 |
| Brassicaceae | Brassica nigra | 3 | BniB03g027770.2N, BniB04g010930.2N, BniB04g058530.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1009 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1139 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g06680 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0086s00023.v1.0, Dusal.0806s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g19500 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.730 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00038410 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb0G37935, Lb1G00204, Lb1G00205, Lb2G13413 |
| Poaceae | Echinochloa crus-galli | 8 | AH03.3106, AH04.450, AH07.111, BH03.3292, BH04.490, BH09.6 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0671130, gene-QOZ80_9BG0694550 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0747990.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_009913, gene-QYE76_068437 |
| Poaceae | Oryza coarctata | 2 | Oco13G008220, Oco14G008690 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g32420.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G288400, gene-BS78_05G083300 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0401502, Pt_Chr0501816, Pt_Chr0501878 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr07G020490, Chr16G010250, Chr17G009340, Chr19G005900 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G940100 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7AG075220 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G539800.2, TraesCS7B02G461100.3 ... |
| Poaceae | Zea mays | 2 | Zm00001eb091620_P002, Zm00001eb200990_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-27162, nbis-gene-51506 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g17634, Zma_g18486 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.Contig8.16, evm.TU.LG10.1109, evm.TU.LG18.221 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g19090 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_14_RagTag.842, evm.TU.Scaffold_16_RagTag.747 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24920 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-4176, nbisL1-mrna-5497 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-17168, nbisL1-mrna-19140 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000025l.58 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00012200, Maker00016195 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-122, nbisL1-mrna-15905 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10374, nbisL1-mrna-23785 |
| Salicaceae | Populus euphratica | 2 | populus_peu00958, populus_peu17955 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621115 |
| Solanaceae | Solanum chilense | 1 | SOLCI004832400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011758 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.17985_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1822 |
| Zosteraceae | Zostera marina | 2 | Zosma01g07120.v3.1, Zosma01g34590.v3.1 |