Basic Information
Locus ID:
Ag6G01082
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
MACPF domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 48519607 | 48525128 | + | Ag6G01082 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.30 | 63,683.99 Da | 42.86 | 93.65 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01823 | MAC/Perforin domain | 117 | 301 | 1.8E-28 | IPR020864 |
| SMART | SM00457 | MACPF_8 | 137 | 303 | 3.5E-6 | IPR020864 |
| ProSiteProfiles | PS51412 | Membrane attack complex/perforin (MACPF) domain profile. | 13 | 315 | 22.191818 | IPR020864 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 492 | 509 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 492 | 520 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G29690.1 | MAC/Perforin domain-containing protein. Encodes a protein containing a domain with significant homology to the MACPF (membrane attack complex and perforin) domain of complements and perforin proteins that are involved in innate immunity in animals. Transgenic <i>cad1-1</i> mutant plants show lesions seen in the hypersensitive response, as well as a spontaneous activation of expression of pathogenesis-related genes and leading to a 32-fold increase in salicylic acid (SA). CAD1 is postulated to act as a negative regulator controlling SA-mediated pathway of programmed cell death in plant immunity. | 0 |
| RefSeq | XP_017235086.1 | PREDICTED: MACPF domain-containing protein CAD1-like [Daucus carota subsp. sativus] | 0 |
| Q9C7N2 | MACPF domain-containing protein CAD1 OS=Arabidopsis thaliana OX=3702 GN=CAD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166INA3 | MACPF domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_003967 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 5.846594 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 4.985031 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.315384 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.834888 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.983041 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 6.678231 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 5.962737 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 5.93431 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 23.470524 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 19.827776 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 22.151781 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 11.764032 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 11.6911 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 10.446535 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 19.885191 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 21.905661 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 9.028484 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 19.001699 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 14.854895 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 41.671539 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 23.922112 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 10.664238 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 10.076266 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 12.862766 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 15.968762 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 10.699412 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 10.671988 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 7.983975 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 11.050649 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 6.869269 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.416502 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 5.081649 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 10.455332 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 8.699014 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 17.50802 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 6.350471 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 6.151413 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 8.666495 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 8.188654 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 9.37296 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.3276 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 83.385735 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 57.935471 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 7.05352 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 8.770157 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 61.316219 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 9.48657 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 15.706301 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 9.7639 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 11.167177 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg20678, jg22198, jg3176 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_20407, gene_492 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah016863, Ah031478 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g157290 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg2203, Sbi_jg34313, Sbi_jg34314, Sbi_jg50324 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg1911, Seu_jg2571 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00005927, GOSA_00011492 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl45591, Sgl50372, Sgl71062 |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000007528, gene:ENSEOMG00000011005 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.7AG0022680, CQ.Regalona.r1.7BG0025200 ... |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30071260, pistato.v30268850, pistato.v30269020 |
| Apiaceae | Apium graveolens | 3 | Ag6G01082, Ag7G00845, Ag8G00023 |
| Arecaceae | Cocos nucifera | 4 | COCNU_06G003560, COCNU_06G003840, COCNU_12G006320 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103708888, gene-LOC103708954, gene-LOC103713418 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.3478.V1.1, AsparagusV1_07.549.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri10G07765, Ftri11G03055, FtriNA22150 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G29690.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007234m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g25570.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g016530.2N, BniB03g034020.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq04G0482, Ceq08G0896 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G0578, Cgl08G0913 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno18g00860 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g08610, gene.Thate09g05680 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-11954, nbisL1-mrna-903 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.884, evm.TU.LG12.749 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00004849, Pov_00023744 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G09567, Lb2G09568, Lb3G21245 |
| Poaceae | Echinochloa crus-galli | 1 | BH02.3710 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0033210, gene-QOZ80_1BG0083270 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0288830.1, HORVU.MOREX.r3.4HG0352420.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_055271, gene-QYE76_064390, gene-QYE76_065015 |
| Poaceae | Oryza coarctata | 2 | Oco01G019190, Oco02G020650 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g54510.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G275700 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0103799, Pt_Chr0602190, Pt_Chr0602205 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G009770, Chr03G016120, Chr05G023720 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G451300, Tel4E01G192600 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG040530, gene_TRIDC3BG045670 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G272500.1, TraesCS3B02G306200.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb153200_P004, Zm00001eb371010_P004 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-12915, nbis-gene-26474 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g11135, Zma_g8650 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG07.892, evm.TU.LG15.798, evm.TU.LG18.204 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc05g10620, gene.Posoc07g12940 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_13_RagTag.429, evm.TU.Scaffold_2_RagTag.545 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-30706, nbisL1-mrna-4651 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-1583, nbisL1-mrna-2090, nbisL1-mrna-9959 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-22056, nbisL1-mrna-22057, nbisL1-mrna-9644 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.628, evm.TU.utg000015l.213 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005530, Maker00015315 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-2631, nbisL1-mrna-4124, nbisL1-mrna-4898 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-13844, nbisL1-mrna-16622, nbisL1-mrna-21533 |
| Salicaceae | Populus euphratica | 5 | populus_peu09877, populus_peu11505, populus_peu17967 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132606948, gene-LOC132621367, gene-LOC132631043 |
| Solanaceae | Solanum chilense | 3 | SOLCI002553200, SOLCI004773700, SOLCI007040600 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107002423, gene-LOC107011896, gene-LOC107029737 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.1677_chr01_-, STRG.27834_chr04_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G2815, TC07G0999 |
| Zosteraceae | Zostera marina | 1 | Zosma01g05590.v3.1 |