Basic Information
Locus ID:
Ag6G01070
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Peroxisome biogenesis protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 47448662 | 47449809 | - | Ag6G01070 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 35,558.53 Da | 32.38 | 80.13 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 59 | 308 | 7.47174E-42 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 227 | 264 | 4.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 141 | 177 | 0.0071 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 186 | 220 | 1.5E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 57 | 88 | 0.2 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 11 | 308 | 8.74E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 308 | 5.8E-87 | IPR015943 |
| SMART | SM00320 | WD40_4 | 46 | 88 | 0.0067 | IPR001680 |
| SMART | SM00320 | WD40_4 | 224 | 264 | 2.7E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 137 | 177 | 4.6E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 268 | 308 | 19.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 180 | 220 | 3.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 94 | 134 | 3.9E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 187 | 229 | 12.714052 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 231 | 264 | 12.112524 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 101 | 143 | 10.742378 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 101 | 136 | 8.544697 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 144 | 179 | 9.54651 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 144 | 186 | 11.577833 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 187 | 223 | 10.390142 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 231 | 264 | 10.100143 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 207 | 221 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 207 | 221 | 1.6E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 164 | 178 | 1.6E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 121 | 135 | 1.6E-7 | IPR020472 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G29260.1 | peroxin 7. Encodes the peroxisomal targeting signal type 2 receptor that facilitates peroxisomal protein translocation. It recognizes proteins with the PTS2 consensus sequence (RLX5HL or a variant) within the first 30 or so amino acids. RNAi experiments suggest that PEX7 is necessary for the maintenance of glyoxysomal but not leaf peroxisomal function. | 0 |
| RefSeq | XP_043618832.1 | peroxisome biogenesis protein 7 [Erigeron canadensis] | 0 |
| Q9XF57 | Peroxisome biogenesis protein 7 OS=Arabidopsis thaliana OX=3702 GN=PEX7 PE=1 SV=2 | 0 | |
| TrEMBL | W9S3M4 | Peroxin-7 OS=Morus notabilis OX=981085 GN=L484_003809 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 54.635551 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 47.801201 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 43.722359 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 46.261028 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 49.917934 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 50.546497 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 50.478584 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 49.355434 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 39.47654 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 43.252117 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 38.837898 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 40.666496 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 41.855679 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 47.981697 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 29.267265 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 30.402773 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 32.99427 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 30.061613 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 34.342796 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 34.729294 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 38.551907 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 35.958721 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 38.413128 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 40.715973 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 35.545074 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 33.64629 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 34.109035 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 35.434643 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 34.269432 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 43.851463 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 36.373905 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 35.081543 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 140.856277 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 67.738419 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 179.161224 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 77.102623 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 65.945061 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 66.836731 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 18.105015 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 20.919342 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 22.074177 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 38.545292 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 30.061901 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 39.520874 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 45.666653 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 46.399189 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 49.343807 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 28.93457 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 30.070278 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 22.261992 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22148 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22321 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g204030 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15867, Sbi_jg56694 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg13886 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012635 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl78224, Sgl80715 |
| Amaranthaceae | Chenopodium album | 10 | gene:ENSEOMG00000016753, gene:ENSEOMG00000028733 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0001970, CQ.Regalona.r1.9BG0020440 |
| Apiaceae | Apium graveolens | 1 | Ag6G01070 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G002540, COCNU_03G013700 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723853 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G01280 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G29260.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10008237m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g25120.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g016740.2N, BniB04g043730.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1286 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1329 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g09620 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0059s00014.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate02g02080, gene.Thate03g19030, gene.Thate08g14580 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.820 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005587 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G24357, Lb4G24361 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.999, BH07.1113, CH07.889 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0107560, gene-QOZ80_2BG0161180 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0299280.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_021899 |
| Poaceae | Oryza coarctata | 2 | Oco03G006650, Oco04G006850 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g14790.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G101200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0206424 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G606800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG054650, gene_TRIDC3BG061230 |
| Poaceae | Triticum aestivum | 1 | TraesCS3D02G373900.1 |
| Poaceae | Zea mays | 1 | Zm00001eb238680_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-34216, nbis-gene-37356, nbis-gene-53129 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12504 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG04.318 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g03070 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.301 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24029 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8161 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20978 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000015l.71 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015620 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-19106 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16828 |
| Salicaceae | Populus euphratica | 2 | populus_peu09938, populus_peu18050 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132636443 |
| Solanaceae | Solanum chilense | 1 | SOLCI002011700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015368 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.10710_chr07_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G0456 |
| Zosteraceae | Zostera marina | 1 | Zosma03g36360.v3.1 |