Basic Information
Locus ID:
Ag6G01008
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 43376050 | 43383710 | - | Ag6G01008 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.90 | 101,669.62 Da | 44.11 | 79.32 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 670 | 820 | 8.33498E-36 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 672 | 816 | 3.2E-24 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 658 | 836 | 8.26E-41 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 630 | 907 | 4.4E-81 | IPR016135 |
| SMART | SM00212 | ubc_7 | 670 | 827 | 4.2E-31 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 667 | 827 | 33.696957 | IPR000608 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33770.1 | phosphate 2. Encodes a ubiquitin-conjugating E2 enzyme. UBC24 mRNA accumulation is suppressed by miR399f, miR399b and miR399c. Involved in phosphate starvation response. | 0 |
| RefSeq | XP_017235118.1 | PREDICTED: probable ubiquitin-conjugating enzyme E2 24 [Daucus carota subsp. sativus] | 0 |
| Q8VY10 | Probable ubiquitin-conjugating enzyme E2 24 OS=Arabidopsis thaliana OX=3702 GN=UBC24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166F0P2 | UBC core domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_008041 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 4.559041 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 8.651509 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 14.600842 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 10.869123 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 11.043827 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 10.70644 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 17.899672 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 8.428017 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 10.65758 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 8.904183 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 11.058309 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 6.646015 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 12.409432 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 12.242744 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.850112 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 2.027439 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 6.58245 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 18.449654 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 8.269488 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 34.583672 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 22.032885 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 92.775108 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 133.091217 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 33.572395 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 64.437553 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 43.669209 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 19.736454 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 35.004749 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 30.292156 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.58048 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.044412 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.60831 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 6.918276 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.780514 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 5.145459 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.511894 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.558318 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.212946 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 4.75322 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 3.707781 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 8.024399 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 5.464324 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 25.796238 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 91.002319 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 132.540482 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 3.535859 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 64.94632 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 3.239676 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 2.71089 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 2.353759 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22240 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018034 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g183150 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26087, Sbi_jg9934 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18795 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017042 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl45930, Sgl50629 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009087, gene:ENSEOMG00000034713 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0005310, CQ.Regalona.r1.8BG0005430 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30072770 |
| Apiaceae | Apium graveolens | 1 | Ag6G01008 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G005250, COCNU_14G003510 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103709500, gene-LOC103715581 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1961.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G12476 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G33770.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016214m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g16120.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g010360.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G2283 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G2586 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g16690, gene.Cymno07g05990 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g07660 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7625 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.953 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005627 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G00146 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.1438, BH05.1608, CH05.1811 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0363670, gene-QOZ80_5BG0411790 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0086090.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_015542, gene-QYE76_015751 |
| Poaceae | Oryza coarctata | 2 | Oco09G016470, Oco10G016300 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g48390.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G231400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0505746 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr12G021380, Chr22G001600 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G635100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG057090, gene_TRIDC1BG065720 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G388400.1, TraesCS1B02G415800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb295490_P001, Zm00001eb430230_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-13705, nbis-gene-24895 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g27358, Zma_g28774 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.48, evm.TU.LG04.702, evm.TU.LG18.1855 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g10650 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.233 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29473 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2416 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20911 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.142 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015964 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5955 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16890 |
| Salicaceae | Populus euphratica | 2 | populus_peu10065, populus_peu18182 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621261 |
| Solanaceae | Solanum chilense | 1 | SOLCI004349100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011001 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.22313_chr09_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2118 |
| Zosteraceae | Zostera marina | 1 | Zosma04g08490.v3.1 |