Basic Information
Locus ID:
Ag6G01000
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 43014022 | 43017115 | - | Ag6G01000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.62 | 36,055.00 Da | 41.15 | 98.37 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 47 | 311 | 7.32993E-109 | - |
| Pfam | PF00069 | Protein kinase domain | 42 | 309 | 7.1E-48 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 21 | 311 | 6.2E-81 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 117 | 324 | 2.9E-61 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 5 | 116 | 2.5E-35 | - |
| SMART | SM00220 | serkin_6 | 41 | 313 | 1.5E-32 | IPR000719 |
| PIRSF | PIRSF000654 | ILK | 9 | 322 | 1.5E-33 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 41 | 317 | 38.336369 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 163 | 175 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 47 | 69 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09010.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_017232897.1 | PREDICTED: putative serine/threonine-protein kinase isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q93YN1 | Cold-responsive protein kinase 1 OS=Arabidopsis thaliana OX=3702 GN=CRPK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J4ZDD9 | Protein kinase domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_018489 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.797238 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.382982 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.278807 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.185454 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.156209 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.222494 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.209009 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 5.425304 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 6.987698 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 6.060232 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 4.368937 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 3.439889 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 3.096975 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 13.981743 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 21.941763 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 3.304482 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 2.473514 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.514053 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 16.039055 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 4.527725 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.094813 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.567148 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 1.712396 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 1.493062 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 2.639207 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 1.133157 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 1.086482 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 1.547185 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.343371 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.366591 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.654099 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.670772 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.693671 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.25924 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.878049 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.382629 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.223657 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.570629 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.655805 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 2.414585 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.346787 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.412532 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 2.438586 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 2.130684 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 2.10498 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 1.340212 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.233536 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 2.097397 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg20327, jg22011, jg24858, jg3271 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22259 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah017986 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g183590 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg10009, Sbi_jg10010, Sbi_jg26243, Sbi_jg6639 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg15293, Seu_jg22348 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00027926 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl45891, Sgl50591 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011634, gene:ENSEOMG00000034253 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8AG0004850 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30073430, pistato.v30285770 |
| Apiaceae | Apium graveolens | 5 | Ag5G01340, Ag6G01000, Ag7G00719, Ag8G00097, Ag8G00931 |
| Arecaceae | Cocos nucifera | 3 | COCNU_04G000300, COCNU_07G012630, COCNU_09G007080 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103704027, gene-LOC103716187, gene-LOC103721119 ... |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_01.929.V1.1, AsparagusV1_04.3353.V1.1 ... |
| Asteraceae | Flaveria trinervia | 5 | Ftri11G23531, Ftri12G31248, Ftri15G04050, Ftri18G20101 ... |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G09010.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020896m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g07430.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB07g024470.2N, BniB07g058430.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G2314 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G2626, Cgl08G1054 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g06410, gene.Thate08g01020 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-3470, nbisL1-mrna-8652 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.1037, evm.TU.LG12.981 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00002765, Pov_00005756, Pov_00026928 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G00090, Lb3G18508, Lb4G24651 |
| Poaceae | Echinochloa crus-galli | 8 | AH01.4253, AH07.2763, AH09.2723, BH01.4558, BH07.2571 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_2BG0194410, gene-QOZ80_3AG0242110 ... |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.2HG0209330.1, HORVU.MOREX.r3.4HG0389790.1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_023923, gene-QYE76_069116 |
| Poaceae | Oryza coarctata | 6 | Oco03G016340, Oco04G017070, Oco05G008930, Oco06G009300 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os02g42620.1, LOC_Os03g15770.2, LOC_Os04g58250.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_01G408000, gene-BS78_04G207800 ... |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0102178, Pt_Chr0102194, Pt_Chr0300089, Pt_Chr0307117 |
| Poaceae | Sporobolus alterniflorus | 10 | Chr01G030450, Chr04G007280, Chr06G006630, Chr07G004370 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel2E01G967900, Tel4E01G376200, Tel6E01G448300 ... |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC2AG078220, gene_TRIDC2BG086190 ... |
| Poaceae | Triticum aestivum | 11 | TraesCS2A02G589900.1, TraesCS2B02G594100.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb011650_P002, Zm00001eb066010_P001 ... |
| Poaceae | Zoysia japonica | 5 | nbis-gene-2156, nbis-gene-23214, nbis-gene-3815 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g13976, Zma_g1575, Zma_g22237, Zma_g3972 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.1611, evm.TU.LG14.860 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g14680 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_13_RagTag.220, evm.TU.Scaffold_1_RagTag.1797 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-29495, nbisL1-mrna-4549, nbisL1-mrna-5590 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1400, nbisL1-mrna-2405 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-20899, nbisL1-mrna-3712, nbisL1-mrna-9571 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000009l.1028, evm.TU.utg000015l.132 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00004984, Maker00015456, Maker00016615 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-2694, nbisL1-mrna-4967, nbisL1-mrna-5966 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-13750, nbisL1-mrna-16702, nbisL1-mrna-16901 |
| Salicaceae | Populus euphratica | 2 | populus_peu10092, populus_peu18211 |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132606802, gene-LOC132617110, gene-LOC132622315 ... |
| Solanaceae | Solanum chilense | 4 | SOLCI004894300, SOLCI005664200, SOLCI006391300 ... |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107009494, gene-LOC107012400, gene-LOC107029545 ... |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.22271_chr09_-, gene_16700, gene_6870 |
| Tamaricaceae | Tamarix chinensis | 3 | TC07G0297, TC07G1275, TC07G2161 |