halophFGD

Basic Information

Locus ID: Ag6G00991

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: isoform X1

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	42309027	42321525	+	Ag6G00991

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.52	150,969.98 Da	50.25	76.58	-0.49

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd18008	DEXDc_SHPRH-like	634	950	4.60139E-88	-
CDD	cd18793	SF2_C_SNF	1206	1314	3.83037E-51	-
Pfam	PF00271	Helicase conserved C-terminal domain	1205	1304	6.9E-16	IPR001650
Pfam	PF00176	SNF2 family N-terminal domain	650	1027	1.6E-65	IPR000330
Pfam	PF00097	Zinc finger, C3HC4 type (RING finger)	1066	1102	2.3E-5	IPR018957
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	618	950	1.82E-45	IPR027417
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	958	1361	2.0E-54	IPR027417
SUPERFAMILY	SSF57850	RING/U-box	1063	1124	2.5E-11	-
Gene3D	G3DSA:3.40.50.300	-	965	1362	2.9E-62	IPR027417
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	1057	1148	3.7E-11	IPR013083
Gene3D	G3DSA:3.40.50.10810	-	838	962	3.3E-29	IPR038718
Gene3D	G3DSA:3.40.50.10810	-	718	809	3.7E-10	IPR038718
Gene3D	G3DSA:3.40.50.10810	-	636	694	7.7E-8	IPR038718
SMART	SM00487	ultradead3	630	922	7.2E-26	IPR014001
SMART	SM00490	helicmild6	1221	1304	6.8E-19	IPR001650
ProSiteProfiles	PS51194	Superfamilies 1 and 2 helicase C-terminal domain profile.	1194	1357	15.084998	IPR001650
ProSiteProfiles	PS51192	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	649	912	14.250086	IPR014001
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	1066	1105	10.320587	IPR001841
ProSitePatterns	PS00518	Zinc finger RING-type signature.	1081	1090	-	IPR017907
MobiDBLite	mobidb-lite	consensus disorder prediction	826	844	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	802	848	-	-

Gene Ontology

Molecular Function:

GO:0005524 (ATP binding) GO:0046872 (metal ion binding) GO:0140658 (ATP-dependent chromatin remodeler activity)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G61140.3	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related.
RefSeq	XP_017235116.1	PREDICTED: helicase-like transcription factor CHR28 [Daucus carota subsp. sativus]
Swiss-Prot	Q94BR5	Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1
TrEMBL	A0A5B6ZPB1	Helicase-like transcription factor CHR28 OS=Davidia involucrata OX=16924 GN=Din_015691 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	18.698004	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	18.218798	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	19.620094	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	21.345905	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	21.028593	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	23.414408	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	20.667873	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	24.344894	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	26.962778	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	26.733055	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	29.645187	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	29.022354	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	31.19113	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	20.678333	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	19.82218	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	16.729395	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	16.892824	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	19.378126	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	16.074976	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	25.279125	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	24.925238	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	25.692436	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	21.940647	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	18.646473	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	21.234421	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	22.310173	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	19.52762	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	15.926702	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	25.181728	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	8.03608		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	8.880315		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	6.763591		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	21.516649		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	19.133835		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	24.1677		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	16.282833		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	9.798605		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	11.734189		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	14.031584	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	14.837296	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	10.608925	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	28.876177	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	23.279917	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	24.602139	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	20.920984	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	24.70437	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	23.93593	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	17.585043	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	22.555162	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	19.497995	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg14677, jg24867
Aizoaceae	Mesembryanthemum crystallinum	2	gene_20494, gene_371
Amaranthaceae	Atriplex hortensis	2	Ah017948, Ah038624
Amaranthaceae	Beta vulgaris	2	BVRB_8g184110, BVRB_9g202380
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg10121, Sbi_jg14675, Sbi_jg26347, Sbi_jg55437
Amaranthaceae	Salicornia europaea	2	Seu_jg22272, Seu_jg25998
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00012479, GOSA_00023979
Amaranthaceae	Suaeda glauca	6	Sgl14640, Sgl19821, Sgl45851, Sgl50552, Sgl78035, Sgl80540
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000011071, gene:ENSEOMG00000017891 ... gene:ENSEOMG00000032296, gene:ENSEOMG00000038737, gene:ENSEOMG00000045736, gene:ENSEOMG00000053025
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.8AG0004480, CQ.Regalona.r1.8BG0004760 ... CQ.Regalona.r1.9AG0000250, CQ.Regalona.r1.9BG0021890
Anacardiaceae	Pistacia vera	2	pistato.v30092390, pistato.v30225380
Apiaceae	Apium graveolens	4	Ag1G02078, Ag5G01871, Ag6G00991, Ag9G02022
Arecaceae	Cocos nucifera	3	COCNU_06G009670, COCNU_07G013020, COCNU_14G006360
Arecaceae	Phoenix dactylifera	3	gene-LOC103706971, gene-LOC103714612, gene-LOC103723980
Asparagaceae	Asparagus officinalis	2	AsparagusV1_03.2207.V1.1, AsparagusV1_09.1106.V1.1
Asteraceae	Flaveria trinervia	4	Ftri18G23503, Ftri5G00132, Ftri8G26014, Ftri9G12447
Brassicaceae	Arabidopsis thaliana	5	AT1G11100.2, AT1G50410.1, AT1G61140.1, AT3G16600.1 ... AT3G20010.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10011211m.g.v1.0, Thhalv10020061m.g.v1.0 ... Thhalv10021937m.g.v1.0, Thhalv10023220m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g37240.v2.2, Sp2g03350.v2.2, Sp3g18040.v2.2
Brassicaceae	Brassica nigra	6	BniB01g043880.2N, BniB02g006060.2N, BniB02g015380.2N ... BniB04g060030.2N, BniB07g030930.2N, BniB07g047080.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq01G2417, Ceq03G1998
Casuarinaceae	Casuarina glauca	3	Cgl01G1089, Cgl01G2721, Cgl03G2147
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno09g00490, gene.Cymno13g00030
Dunaliellaceae	Dunaliella salina	1	Dusal.0008s00002.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate04g04900, gene.Thate05g02340
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-3481, nbisL1-mrna-971
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG03.549, evm.TU.LG12.999
Plantaginaceae	Plantago ovata	4	Pov_00002580, Pov_00006990, Pov_00016310, Pov_00038249
Plumbaginaceae	Limonium bicolor	2	Lb3G20732, Lb4G24643
Poaceae	Echinochloa crus-galli	11	AH02.3482, AH02.3484, AH03.59, AH09.2379, AH09.2382, BH03.65 ... BH02.3472, BH02.3506, BH05.2094, CH02.3014, CH05.2166
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_1BG0085740, gene-QOZ80_8AG0619410 ... gene-QOZ80_8BG0646980
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.2HG0199060.1, HORVU.MOREX.r3.3HG0293510.1 ... HORVU.MOREX.r3.7HG0696030.2
Poaceae	Lolium multiflorum	3	gene-QYE76_032898, gene-QYE76_046433, gene-QYE76_056128
Poaceae	Oryza coarctata	5	Oco01G021860, Oco02G022430, Oco07G016700, Oco15G003400 ... Oco16G003360
Poaceae	Paspalum vaginatum	4	gene-BS78_03G296700, gene-BS78_06G239700 ... gene-BS78_06G239800, gene-BS78_07G064500
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0300964, Pt_Chr0300976, Pt_Chr0402430, Pt_Chr0504444 ... Pt_Chr0601625
Poaceae	Sporobolus alterniflorus	9	Chr02G007990, Chr03G017580, Chr05G025530, Chr16G002150 ... Chr17G001980, Chr20G012110, Chr23G005070, Chr26G016180, Chr29G010600
Poaceae	Thinopyrum elongatum	3	Tel2E01G808400, Tel3E01G511100, Tel7E01G510400
Poaceae	Triticum dicoccoides	6	gene_TRIDC2AG067760, gene_TRIDC2BG072960 ... gene_TRIDC3AG046140, gene_TRIDC3BG052270, gene_TRIDC7AG041190, gene_TRIDC7BG032340
Poaceae	Triticum aestivum	9	TraesCS2A02G479900.2, TraesCS2B02G504600.2 ... TraesCS2D02G479100.1, TraesCS3A02G317700.1, TraesCS3B02G348200.1, TraesCS3D02G313600.3, TraesCS7A02G296900.7, TraesCS7B02G198800.6, TraesCS7D02G291500.4
Poaceae	Zea mays	3	Zm00001eb171780_P003, Zm00001eb369880_P003 ... Zm00001eb431470_P001
Poaceae	Zoysia japonica	3	nbis-gene-11748, nbis-gene-31250, nbis-gene-48521
Poaceae	Zoysia macrostachya	4	Zma_g11277, Zma_g22016, Zma_g23711, Zma_g8775
Portulacaceae	Portulaca oleracea	4	evm.TU.LG01.1653, evm.TU.LG02.2333, evm.TU.LG14.886 ... evm.TU.LG23.566
Posidoniaceae	Posidonia oceanica	2	gene.Posoc08g05830, gene.Posoc10g00090
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_13_RagTag.204, evm.TU.Scaffold_15_RagTag.480
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-26651, nbisL1-mrna-29516, nbisL1-mrna-29920
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-14471, nbisL1-mrna-2393
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-15863, nbisL1-mrna-20884
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000001l.244, evm.TU.utg000015l.123
Rhizophoraceae	Kandelia obovata	2	Maker00002702, Maker00015383
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-13851, nbisL1-mrna-5976
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-16914, nbisL1-mrna-2540
Salicaceae	Populus euphratica	4	populus_peu10117, populus_peu18237, populus_peu22430 ... populus_peu23811
Solanaceae	Lycium barbarum	2	gene-LOC132618056, gene-LOC132625082
Solanaceae	Solanum chilense	2	SOLCI001345400, SOLCI002003500
Solanaceae	Solanum pennellii	2	gene-LOC107011765, gene-LOC107014911
Tamaricaceae	Reaumuria soongarica	3	STRG.22233_chr09_+, gene_7420, gene_9755
Tamaricaceae	Tamarix chinensis	2	TC02G1650, TC07G2208
Zosteraceae	Zostera marina	1	Zosma15g00160.v3.1