halophFGD

Basic Information

Locus ID: Ag6G00976

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: riboflavin kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	41800357	41803903	-	Ag6G00976

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.88	39,162.48 Da	45.56	93.66	-0.11

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF01687	Riboflavin kinase	213	337	1.0E-38	IPR015865
Pfam	PF13419	Haloacid dehalogenase-like hydrolase	14	193	8.9E-29	IPR041492
SUPERFAMILY	SSF56784	HAD-like	11	195	1.03E-43	IPR036412
SUPERFAMILY	SSF82114	Riboflavin kinase-like	213	353	5.23E-42	IPR023465
Gene3D	G3DSA:3.40.50.1000	-	14	198	2.2E-54	IPR023214
Gene3D	G3DSA:1.10.150.240	Putative phosphatase; domain 2	25	92	2.2E-54	IPR023198
Gene3D	G3DSA:2.40.30.30	-	211	354	3.1E-53	IPR023465
SMART	SM00904	Flavokinase_2	209	339	1.7E-34	IPR015865
TIGRFAM	TIGR01509	HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3	92	193	2.0E-16	IPR006439
TIGRFAM	TIGR01549	HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1	107	187	8.4E-6	IPR006439
PRINTS	PR00413	Haloacid dehalogenase/epoxide hydrolase family signature	105	118	6.5E-8	IPR006439
PRINTS	PR00413	Haloacid dehalogenase/epoxide hydrolase family signature	182	195	6.5E-8	IPR006439
PRINTS	PR00413	Haloacid dehalogenase/epoxide hydrolase family signature	137	153	6.5E-8	IPR006439
PRINTS	PR00413	Haloacid dehalogenase/epoxide hydrolase family signature	11	22	6.5E-8	IPR006439
PRINTS	PR00413	Haloacid dehalogenase/epoxide hydrolase family signature	155	175	6.5E-8	IPR006439
SFLD	SFLDG01129	C1.5: HAD, Beta-PGM, Phosphatase Like	11	195	2.0E-39	-
SFLD	SFLDG01135	C1.5.6: HAD, Beta-PGM, Phosphatase Like	11	195	2.0E-39	-

Gene Ontology

Biological Process:

GO:0009231 (riboflavin biosynthetic process)

Molecular Function:

GO:0008531 (riboflavin kinase activity)

KEGG Pathway

KO Term:

K20884 (riboflavin kinase / FMN hydrolase [EC:2.7.1.26 3.1.3.102])

Pathway:

ko00740 (Riboflavin metabolism) map00740 (Riboflavin metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites)

Module:

M00125 (Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD)

Reaction:

R00548 (FMN + H2O <=> Riboflavin + Orthophosphate) R00549 (ATP + Riboflavin <=> ADP + FMN)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G21470.1	riboflavin kinase/FMN hydrolase. Bifunctional enzyme that catalyzes hydrolysis of FMN to riboflavin, and phosphorylation of riboflavin to FMN.
RefSeq	XP_017232923.1	PREDICTED: bifunctional riboflavin kinase/FMN phosphatase-like [Daucus carota subsp. sativus]
Swiss-Prot	Q84MD8	Bifunctional riboflavin kinase/FMN phosphatase OS=Arabidopsis thaliana OX=3702 GN=FHY PE=1 SV=1
TrEMBL	A0A166ITS9	riboflavin kinase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_004137 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0.247789	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0.049932	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0.638082	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.275981	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.717185	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.22979	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.349132	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.304971	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.083735	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.289467	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.315835	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.307229	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.480599		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.058162		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.068452		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.175514	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.190545	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.147734	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.166268	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.42254	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.207819	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.680531	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.263408	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg13860
Aizoaceae	Mesembryanthemum crystallinum	1	gene_39
Amaranthaceae	Atriplex hortensis	1	Ah008086
Amaranthaceae	Beta vulgaris	1	BVRB_8g181640
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg10388, Sbi_jg47999
Amaranthaceae	Salicornia europaea	1	Seu_jg22200
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00023934
Amaranthaceae	Suaeda glauca	3	Sgl45760, Sgl45762, Sgl50505
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000010284, gene:ENSEOMG00000011778 ... gene:ENSEOMG00000028048, gene:ENSEOMG00000034310, gene:ENSEOMG00000040434, gene:ENSEOMG00000044327
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.4AG0019540, CQ.Regalona.r1.4BG0019860 ... CQ.Regalona.r1.8BG0004170
Anacardiaceae	Pistacia vera	1	pistato.v30092640
Apiaceae	Apium graveolens	2	Ag6G00976, Ag7G00679
Arecaceae	Cocos nucifera	1	COCNU_07G009060
Arecaceae	Phoenix dactylifera	3	gene-LOC103702887, gene-LOC103707307, gene-LOC103722147
Asparagaceae	Asparagus officinalis	1	AsparagusV1_04.236.V1.1
Asteraceae	Flaveria trinervia	2	Ftri15G17673, Ftri18G03922
Brassicaceae	Arabidopsis thaliana	1	AT4G21470.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10025469m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp7g19590.v2.2
Brassicaceae	Brassica nigra	2	BniB03g039960.2N, BniB05g015650.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq04G1466
Casuarinaceae	Casuarina glauca	1	Cgl04G1630
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno03g06550, gene.Cymno17g02330
Dunaliellaceae	Dunaliella salina	1	Dusal.0543s00004.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate05g17850
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-987
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG12.1031
Plantaginaceae	Plantago ovata	2	Pov_00005782, Pov_00024131
Plumbaginaceae	Limonium bicolor	3	Lb2G14285, Lb3G21051, Lb4G24946
Poaceae	Echinochloa crus-galli	3	AH01.1841, BH01.2155, CH01.2250
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0127050, gene-QOZ80_2BG0182610 ... gene-QOZ80_6AG0506320, gene-QOZ80_6BG0458410
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.1HG0040860.1
Poaceae	Lolium multiflorum	1	gene-QYE76_011401
Poaceae	Oryza coarctata	2	Oco19G005570, Oco20G005490
Poaceae	Oryza sativa	2	LOC_Os10g14814.1, LOC_Os10g32730.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G212200, gene-BS78_08G004400
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0304110, Pt_Chr0405276, Pt_Chr0502525, Pt_Chr0700252 ... Pt_Chr0700443
Poaceae	Sporobolus alterniflorus	4	Chr06G013270, Chr0G002480, Chr0G003580, Chr24G012360
Poaceae	Thinopyrum elongatum	1	Tel1E01G275900
Poaceae	Triticum dicoccoides	2	gene_TRIDC1AG022250, gene_TRIDC1BG027070
Poaceae	Triticum aestivum	3	TraesCS1A02G146600.1, TraesCS1B02G164900.1 ... TraesCS1D02G144800.1
Poaceae	Zea mays	1	Zm00001eb278020_P003
Poaceae	Zoysia japonica	2	nbis-gene-19267, nbis-gene-56437
Poaceae	Zoysia macrostachya	1	Zma_g16156
Portulacaceae	Portulaca oleracea	4	evm.TU.LG01.1690, evm.TU.LG13.991, evm.TU.LG14.927 ... evm.TU.LG21.655
Posidoniaceae	Posidonia oceanica	2	gene.Posoc02g15900, gene.Posoc10g06660
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_12_RagTag.915, evm.TU.Scaffold_13_RagTag.161
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-23834, nbisL1-mrna-29555, nbisL1-mrna-29878
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-9738
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-21635
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000015l.105, evm.TU.utg000027l.83
Rhizophoraceae	Kandelia obovata	2	Maker00015594, Maker00017436
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-10662, nbisL1-mrna-5991
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-16938, nbisL1-mrna-23903
Salicaceae	Populus euphratica	2	populus_peu14791, populus_peu32466
Solanaceae	Lycium barbarum	1	gene-LOC132622454
Solanaceae	Solanum chilense	1	SOLCI000110500
Solanaceae	Solanum pennellii	1	gene-LOC107011963
Tamaricaceae	Reaumuria soongarica	1	STRG.11214_chr05_+
Tamaricaceae	Tamarix chinensis	1	TC07G2278
Zosteraceae	Zostera marina	1	Zosma04g25920.v3.1