Basic Information
Locus ID:
Ag6G00975
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Telomerase Cajal body protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 41750760 | 41757360 | - | Ag6G00975 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.61 | 49,222.07 Da | 45.40 | 58.74 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 255 | 292 | 1.7E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 59 | 379 | 6.54E-43 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 59 | 382 | 3.5E-42 | IPR015943 |
| SMART | SM00320 | WD40_4 | 296 | 338 | 15.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 155 | 198 | 3.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 252 | 292 | 1.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 205 | 249 | 0.099 | IPR001680 |
| SMART | SM00320 | WD40_4 | 341 | 380 | 9.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 45 | 88 | 16.0 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 412 | 437 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 422 | 437 | - | - |
| Coils | Coil | Coil | 5 | 25 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21520.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_017232013.1 | PREDICTED: telomerase Cajal body protein 1 isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q60525 | Telomerase Cajal body protein 1 OS=Mesocricetus auratus OX=10036 GN=Wrap53 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166F1P5 | Telomerase Cajal body protein 1 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_008069 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 8.07209 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 5.31725 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 3.853898 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 4.395669 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.738717 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 6.061318 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.033388 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 2.505762 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 22.641478 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 23.118126 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 21.230961 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 21.409264 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 18.004969 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 16.669094 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 8.5029 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 8.506958 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 6.118117 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 8.964676 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 5.883457 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 8.530784 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 8.686259 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 8.911847 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 9.401196 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 10.214238 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 8.830964 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 9.83758 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 6.731729 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 8.308207 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 9.244223 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 7.473997 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 8.961432 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 7.31561 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.25397 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 6.374404 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 2.359565 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.956779 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.784707 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.57841 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 11.560287 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 8.808956 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.341382 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 10.869475 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 10.641348 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 11.685729 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 12.814517 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 12.931733 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 11.017434 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 14.145536 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 16.323301 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 15.340281 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg13861 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21959 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah017869 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g181630 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg47971 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg22194 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00023932 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl45759, Sgl45761, Sgl50504 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000010268, gene:ENSEOMG00000033120 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8BG0004160 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30092650 |
| Apiaceae | Apium graveolens | 1 | Ag6G00975 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.1447.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G16334 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G21520.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025271m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g19630.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g015600.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1467 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1631 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g15490 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0467s00006.v1.0, Dusal.0467s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g19430 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-988 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.1032 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005785 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G24945 |
| Poaceae | Echinochloa crus-galli | 3 | BH01.813, CH01.821, Contig309.157 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0217050, gene-QOZ80_3BG0262350 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0340710.1, HORVU.MOREX.r3.5HG0476640.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_062027 |
| Poaceae | Oryza coarctata | 1 | Oco05G023040 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G088000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0107072, Pt_Chr0107512 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr04G028240, Chr07G027100 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G111600 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC4BG010530 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G246200.2, TraesCS4B02G068600.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb056530_P004 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-15009, nbis-gene-15010 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g520 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.1693, evm.TU.LG14.929 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g19250 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.916 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-23835 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14761 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000027l.82 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017426 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10663 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23902 |
| Salicaceae | Populus euphratica | 2 | populus_peu10153, populus_peu18270 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622244 |
| Solanaceae | Solanum chilense | 1 | SOLCI000110400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009119 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16683 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2279 |
| Zosteraceae | Zostera marina | 1 | Zosma04g22090.v3.1 |