halophFGD

Basic Information

Locus ID: Ag6G00967

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: transport inhibitor response

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	41326009	41330749	-	Ag6G00967

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.77	65,567.09 Da	49.60	94.96	-0.04

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13516	Leucine Rich repeat	168	188	0.0034	IPR001611
Pfam	PF18511	F-box	22	61	4.4E-19	IPR041567
Pfam	PF18791	Transport inhibitor response 1 protein domain	80	126	9.0E-22	IPR041101
SUPERFAMILY	SSF52047	RNI-like	37	561	2.09E-32	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	60	583	4.1E-166	IPR032675
Gene3D	G3DSA:1.20.1280.50	-	19	59	3.7E-17	-
SMART	SM00367	LRR_CC_2	301	325	310.0	IPR006553
SMART	SM00367	LRR_CC_2	493	517	240.0	IPR006553
SMART	SM00367	LRR_CC_2	118	142	44.0	IPR006553
SMART	SM00367	LRR_CC_2	326	349	450.0	IPR006553
SMART	SM00367	LRR_CC_2	444	467	15.0	IPR006553
SMART	SM00367	LRR_CC_2	143	168	350.0	IPR006553
SMART	SM00367	LRR_CC_2	384	408	46.0	IPR006553

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K14485 (transport inhibitor response 1)

Pathway:

ko04075 (Plant hormone signal transduction) map04075 (Plant hormone signal transduction)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G62980.1	F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation.
RefSeq	XP_017229520.1	PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like [Daucus carota subsp. sativus]
Swiss-Prot	Q570C0	Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2
TrEMBL	A0A5B6YMZ6	F-box domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_002608 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	12.789594	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	12.014516	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	14.674566	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	14.191624	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	13.953717	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	9.190335	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	11.586202	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	12.125039	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	1.217593	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	1.163653	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0.910394	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	36.082336	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	20.248049	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	21.939556	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	4.87785	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	6.283647	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	7.872724	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	7.566863	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	6.590328	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	5.736195	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	6.135616	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	7.064717	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	7.05103	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	8.045184	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	9.609831	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	6.228004	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	6.454006	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	8.399452	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	6.252269	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	3.740731		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	4.670431		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	3.936855		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	9.484903		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	4.352767		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	7.178741		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	3.085802		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	2.555833		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	1.770537		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	8.06223	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	6.280149	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	4.071367	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	1.03616	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	2.131396	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	3.162152	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	5.244224	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	1.172252	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	3.777364	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	1.50403	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	1.517482	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	1.834594	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	8	jg16093, jg21987, jg24850, jg35232, jg37916, jg38652, jg8855 ... jg40505
Aizoaceae	Mesembryanthemum crystallinum	4	gene_12043, gene_17756, gene_243, gene_6284
Amaranthaceae	Atriplex hortensis	3	Ah005993, Ah012829, Ah017863
Amaranthaceae	Beta vulgaris	3	BVRB_4g082790, BVRB_6g152100, BVRB_8g181550
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg10329, Sbi_jg16886, Sbi_jg42427, Sbi_jg45027 ... Sbi_jg47935, Sbi_jg61417
Amaranthaceae	Salicornia europaea	3	Seu_jg179, Seu_jg22159, Seu_jg27124
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00002277, GOSA_00008257, GOSA_00023926
Amaranthaceae	Suaeda glauca	11	Sgl24764, Sgl29910, Sgl31852, Sgl32536, Sgl37130, Sgl37812 ... Sgl45736, Sgl45737, Sgl45744, Sgl50492, Sgl50493
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000000228, gene:ENSEOMG00000000503 ... gene:ENSEOMG00000009633, gene:ENSEOMG00000011586, gene:ENSEOMG00000027273, gene:ENSEOMG00000031276, gene:ENSEOMG00000032455, gene:ENSEOMG00000041233, gene:ENSEOMG00000046198
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.4AG0009790, CQ.Regalona.r1.4BG0010010 ... CQ.Regalona.r1.6AG0008640, CQ.Regalona.r1.6BG0009330, CQ.Regalona.r1.8AG0003950, CQ.Regalona.r1.8BG0004110
Anacardiaceae	Pistacia vera	3	pistato.v30009940, pistato.v30021110, pistato.v30092700
Apiaceae	Apium graveolens	6	Ag11G03094, Ag2G02546, Ag4G02429, Ag6G00967, Ag7G00671 ... Ag8G00968
Arecaceae	Cocos nucifera	6	COCNU_01G002430, COCNU_02G015540, COCNU_12G001850 ... COCNU_15G005600, contig69407559G000010, scaffold104621G000010
Arecaceae	Phoenix dactylifera	5	gene-LOC103708076, gene-LOC103713980, gene-LOC103714767 ... gene-LOC103717830, gene-LOC103718314
Asparagaceae	Asparagus officinalis	2	AsparagusV1_03.845.V1.1, AsparagusV1_09.1456.V1.1
Asteraceae	Flaveria trinervia	5	Ftri10G25212, Ftri11G31972, Ftri12G27833, Ftri18G09994 ... Ftri9G18197
Brassicaceae	Arabidopsis thaliana	4	AT1G12820.1, AT3G26810.1, AT3G62980.1, AT4G03190.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10003903m.g.v1.0, Thhalv10005852m.g.v1.0 ... Thhalv10007195m.g.v1.0, Thhalv10028532m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g11390.v2.2, Sp2g15950.v2.2, Sp5g00540.v2.2 ... Sp6g03220.v2.2
Brassicaceae	Brassica nigra	8	BniB02g007670.2N, BniB03g005390.2N, BniB04g007720.2N ... BniB06g052110.2N, BniB06g061310.2N, BniB08g039010.2N, BniB08g045930.2N, BniB08g076980.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq01G0756, Ceq04G1477, Ceq06G1611, Ceq08G0056
Casuarinaceae	Casuarina glauca	5	Cgl04G1640, Cgl06G1673, Cgl08G0064, Cgl08G0066, Cgl08G0067
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno03g13270, gene.Cymno04g05410, gene.Cymno05g04880
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g14820, gene.Thate06g10820, gene.Thate07g03560
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-10381, nbisL1-mrna-2964
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG04.273, evm.TU.LG05.84, evm.TU.LG12.1040
Plantaginaceae	Plantago ovata	4	Pov_00005790, Pov_00008210, Pov_00025037, Pov_00038214
Plumbaginaceae	Limonium bicolor	4	Lb1G06892, Lb2G14502, Lb4G22358, Lb5G27979
Poaceae	Echinochloa crus-galli	8	AH04.1381, AH05.993, AH09.869, BH04.1391, BH05.1036 ... BH09.863, CH04.1583, CH09.937
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_4AG0319640, gene-QOZ80_4BG0351030 ... gene-QOZ80_5AG0404790, gene-QOZ80_5BG0452910, gene-QOZ80_9AG0687680, gene-QOZ80_9BG0716170
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.1HG0022460.1, HORVU.MOREX.r3.2HG0163780.2 ... HORVU.MOREX.r3.5HG0493240.1
Poaceae	Lolium multiflorum	2	gene-QYE76_009663, gene-QYE76_043629
Poaceae	Oryza coarctata	6	Oco07G004360, Oco08G004490, Oco09G002470, Oco10G002490 ... Oco21G006200, Oco22G007280
Poaceae	Oryza sativa	3	LOC_Os04g32460.1, LOC_Os05g05800.1, LOC_Os11g31620.1
Poaceae	Paspalum vaginatum	3	gene-BS78_05G151300, gene-BS78_06G074100 ... gene-BS78_09G045900
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0302950, Pt_Chr0501438, Pt_Chr0501985, Pt_Chr0502105
Poaceae	Sporobolus alterniflorus	10	Chr07G017260, Chr12G024400, Chr18G001000, Chr22G015120 ... Chr23G014550, Chr25G012380, Chr26G005280, Chr26G006440, Chr30G012020, Chr31G005600
Poaceae	Thinopyrum elongatum	3	Tel1E01G188200, Tel2E01G511200, Tel5E01G447600
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG013050, gene_TRIDC1BG017270 ... gene_TRIDC2AG041450, gene_TRIDC2BG044420, gene_TRIDC5AG042230, gene_TRIDC5BG046090
Poaceae	Triticum aestivum	9	TraesCS1A02G091300.1, TraesCS1B02G119100.1 ... TraesCS1D02G099900.1, TraesCS2A02G286200.1, TraesCS2B02G302900.1, TraesCS2D02G285000.1, TraesCS5A02G281100.1, TraesCS5B02G280100.1, TraesCS5D02G288000.1
Poaceae	Zea mays	4	Zm00001eb085030_P001, Zm00001eb113030_P001 ... Zm00001eb354200_P001, Zm00001eb421340_P001
Poaceae	Zoysia japonica	3	nbis-gene-18179, nbis-gene-44358, nbis-gene-52875
Poaceae	Zoysia macrostachya	4	Zma_g17996, Zma_g21172, Zma_g26441, Zma_g27708
Portulacaceae	Portulaca oleracea	7	evm.TU.LG03.777, evm.TU.LG08.563, evm.TU.LG12.949 ... evm.TU.LG18.1165, evm.TU.LG20.1175, evm.TU.LG20.711, evm.TU.LG22.1595
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g10390, gene.Posoc02g32390
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_11_RagTag.229, evm.TU.Scaffold_5_RagTag.910 ... evm.TU.Scaffold_9_RagTag.848
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-11437, nbisL1-mrna-14192, nbisL1-mrna-21370
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-1627, nbisL1-mrna-3668, nbisL1-mrna-5405
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-11529, nbisL1-mrna-14334, nbisL1-mrna-18452
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000003l.561, evm.TU.utg000005l.226 ... evm.TU.utg000006l.252
Rhizophoraceae	Kandelia obovata	3	Maker00009741, Maker00010198, Maker00013649
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-10047, nbisL1-mrna-1544, nbisL1-mrna-372
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-18984, nbisL1-mrna-5202, nbisL1-mrna-7525
Salicaceae	Populus euphratica	7	populus_peu00806, populus_peu01310, populus_peu10160 ... populus_peu14472, populus_peu18275, populus_peu24341, populus_peu27206
Solanaceae	Lycium barbarum	5	gene-LOC132605614, gene-LOC132608403, gene-LOC132609227 ... gene-LOC132621074, gene-LOC132621841
Solanaceae	Solanum chilense	2	SOLCI001336200, SOLCI006140500
Solanaceae	Solanum pennellii	2	gene-LOC107011102, gene-LOC107031180
Tamaricaceae	Reaumuria soongarica	5	STRG.13959_chr05_-, STRG.22146_chr09_-, STRG.24388_chr08_- ... STRG.29472_chr10_-, STRG.32027_chr09_+
Tamaricaceae	Tamarix chinensis	5	TC01G3412, TC03G1138, TC05G2410, TC06G0813, TC07G2289
Zosteraceae	Zostera marina	2	Zosma01g13700.v3.1, Zosma02g25510.v3.1