halophFGD

Basic Information

Locus ID: Ag6G00904

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Calcium-dependent protein kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	36584459	36589835	-	Ag6G00904

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.44	42,135.29 Da	38.13	70.03	-0.62

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00051	EFh	304	362	4.33085E-19	IPR002048
Pfam	PF13499	EF-hand domain pair	300	362	4.1E-15	IPR002048
Pfam	PF00069	Protein kinase domain	79	236	6.5E-45	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	79	235	2.97E-50	IPR011009
SUPERFAMILY	SSF47473	EF-hand	263	361	7.67E-30	IPR011992
Gene3D	G3DSA:1.10.238.10	-	298	361	3.6E-35	-
Gene3D	G3DSA:1.10.238.10	-	258	297	3.6E-35	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	81	165	5.1E-31	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	166	236	5.5E-20	-
SMART	SM00054	efh_1	265	293	1.2	IPR002048
SMART	SM00054	efh_1	301	329	0.0011	IPR002048
SMART	SM00054	efh_1	336	364	9.0E-7	IPR002048
SMART	SM00220	serkin_6	79	361	3.2E-33	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	79	372	29.61569	IPR000719
ProSiteProfiles	PS50222	EF-hand calcium-binding domain profile.	333	367	12.198088	IPR002048
ProSiteProfiles	PS50222	EF-hand calcium-binding domain profile.	297	332	15.238686	IPR002048
ProSiteProfiles	PS50222	EF-hand calcium-binding domain profile.	261	296	9.464338	IPR002048
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	85	112	-	IPR017441
ProSitePatterns	PS00018	EF-hand calcium-binding domain.	310	322	-	IPR018247
ProSitePatterns	PS00018	EF-hand calcium-binding domain.	274	286	-	IPR018247
ProSitePatterns	PS00018	EF-hand calcium-binding domain.	345	357	-	IPR018247
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	199	211	-	IPR008271
MobiDBLite	mobidb-lite	consensus disorder prediction	24	67	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	24	60	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005509 (calcium ion binding) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K13412 (calcium-dependent protein kinase [EC:2.7.11.1])

Pathway:

ko04626 (Plant-pathogen interaction) map04626 (Plant-pathogen interaction)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G04720.1	calcium-dependent protein kinase 21. member of Calcium Dependent Protein Kinase
RefSeq	XP_017234712.1	PREDICTED: calcium-dependent protein kinase [Daucus carota subsp. sativus]
Swiss-Prot	P28582	Calcium-dependent protein kinase OS=Daucus carota OX=4039 PE=2 SV=2
TrEMBL	A0A166IWB4	Calcium-dependent protein kinase 29 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_004217 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	9.599074	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	9.209553	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	11.162443	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	11.525187	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	12.107166	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	11.050529	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	11.598562	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	7.616212	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	30.14275	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	28.917946	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	29.329147	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	23.040602	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	24.117857	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	18.433405	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	18.065275	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	25.931112	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	13.496815	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	30.121244	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	19.563284	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	41.886723	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	37.647232	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	20.929483	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	19.078928	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	16.618925	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	20.458591	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	26.957123	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	26.03652	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	20.068888	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	21.905638	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	6.077542		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	8.04619		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	5.41007		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	14.002591		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	12.499034		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	17.058897		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	7.856541		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	6.082991		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	6.867684		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	15.256137	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	11.901584	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	8.676392	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	78.437561	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	53.08704	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	20.263643	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	18.805109	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	66.624687	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	20.000488	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	17.852276	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	17.389555	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	13.418594	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	1	Ag6G00904
Poaceae	Zoysia japonica	1	nbis-gene-50539