halophFGD

Basic Information

Locus ID: Ag6G00895

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	36381965	36383824	+	Ag6G00895

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.18	25,444.20 Da	50.93	82.37	-0.52

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	111	202	5.88E-7	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	13	205	1.3E-6	-
Coils	Coil	Coil	94	114	-	-

Best hit

Source	Best Hit ID	Description	E-value
TrEMBL	A0A175YMM3	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_027729 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	1.837037	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	1.0997	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.949585	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	1.107359	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	1.033725	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	1.76114	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	1.523366	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	1.11924	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	2.26249	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	2.406576	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	1.818115	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	2.238729	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	1.803293	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	2.122663	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	2.166418	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	1.676076	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	1.112246	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	2.654354	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	1.575365	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	1.614757	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	3.424477	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	1.103716	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	1.342635	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	1.159043	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.730587	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	2.60161	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	1.73449	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	3.296993	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	3.553562	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.54032		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	1.506969		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	1.260585		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	1.947588		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	1.41779		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	1.05782		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	1.598887		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	1.017823		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.923806		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.079539	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	2.452366	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	1.856991	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	3.284624	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	1.619264	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.501728	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	1.937199	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	2.094782	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	1.984936	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	1.250387	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	2.278659	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	6	Ag2G02234, Ag2G02235, Ag4G02479, Ag6G00895, AgUnG00500 ... AgUnG01242