Basic Information
Locus ID:
Ag6G00829
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Leucine-rich repeat receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 32274991 | 32275459 | + | Ag6G00829 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.64 | 9,942.37 Da | 38.00 | 105.23 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 6 | 71 | 2.26E-7 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 88 | 3.0E-10 | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36570.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_048329809.1 | probable leucine-rich repeat receptor-like protein kinase At1g68400 isoform X3 [Ziziphus jujuba var. spinosa] | 0 |
| Q9SJQ1 | Leucine-rich repeat receptor-like protein kinase PXC1 OS=Arabidopsis thaliana OX=3702 GN=PXC1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166BVK2 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_011687 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 3.339926 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.124521 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.209483 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.361289 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.247263 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.170429 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg28469, jg28470 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30102030 |
| Apiaceae | Apium graveolens | 3 | Ag3G00986, Ag6G00829, Ag9G00333 |
| Arecaceae | Cocos nucifera | 1 | COCNU_10G010640 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103712491, gene-LOC103720324 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.3496.V1.1, AsparagusV1_08.2208.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri11G09226, Ftri12G31623, Ftri12G33467, Ftri7G19365 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0661 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g11640, gene.Thate06g07950 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.248 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00002091, Pov_00019849, Pov_00019850, Pov_00039828 |
| Poaceae | Echinochloa crus-galli | 2 | CH01.2167, Contig328.4 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0112150, gene-QOZ80_2BG0165550 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0046210.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_011668, gene-QYE76_011793, gene-QYE76_043862 |
| Poaceae | Oryza coarctata | 2 | Oco19G006840, Oco20G006820 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g66040.1, LOC_Os10g35040.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G190900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0502701, Pt_Chr0502716 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G030410, Chr09G001740, Chr15G021780 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G302300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG025340, gene_TRIDC1BG030460 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G165600.1, TraesCS1B02G182300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb044900_P006 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-43938 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g15229 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g10660 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1569 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-3650 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4601 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18957 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.371 |
| Salicaceae | Populus euphratica | 7 | populus_peu02536, populus_peu02538, populus_peu09853 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132600179, gene-LOC132632451 |
| Solanaceae | Solanum chilense | 2 | SOLCI001227200, SOLCI005915700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107013989, gene-LOC107029243 |