Basic Information
Locus ID:
Ag6G00775
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
MND1-interacting protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 29862023 | 29866273 | - | Ag6G00775 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 77,694.79 Da | 45.48 | 72.98 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 640 | 688 | 8.0E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 642 | 690 | 1.02E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 626 | 694 | 6.5E-15 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 643 | 683 | 10.025527 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 299 | 331 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 598 | 617 | - | - |
| Coils | Coil | Coil | 492 | 526 | - | - |
| Coils | Coil | Coil | 429 | 470 | - | - |
| Coils | Coil | Coil | 570 | 597 | - | - |
| Coils | Coil | Coil | 531 | 560 | - | - |
| Coils | Coil | Coil | 404 | 424 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35330.2 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_017235307.1 | PREDICTED: MND1-interacting protein 1-like [Daucus carota subsp. sativus] | 0 |
| Q8RX22 | MND1-interacting protein 1 OS=Arabidopsis thaliana OX=3702 GN=MIP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J4ZWL3 | RING-type domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_012618 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 52.364254 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 37.844105 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 33.712055 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 37.056103 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 39.24329 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 26.65995 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 29.582712 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 22.111828 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 57.90995 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 59.257458 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 56.44429 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 64.926506 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 63.313179 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 58.657215 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 23.413898 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 25.21472 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 27.135813 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 28.377972 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 22.788044 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 26.724262 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 35.380474 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 36.162464 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 32.508797 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 31.728258 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 32.022617 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 36.585766 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 31.256485 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 33.450638 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 30.834866 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 16.829681 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 16.788933 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 13.984376 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 24.822392 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 28.465433 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 24.546999 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 23.05051 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 10.961434 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 16.592432 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 31.582621 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 24.553116 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 26.565214 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 34.924133 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 41.64677 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 41.980606 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 43.016857 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 31.286274 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 43.344364 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 40.873402 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 39.431664 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 37.707283 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg23450, jg37122 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14994 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004219 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g106510 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg24436, Sbi_jg24444, Sbi_jg8289 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11746 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001633 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51396, Sgl56639 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006454, gene:ENSEOMG00000023664 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0002930, CQ.Regalona.r1.5BG0003050 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30029070, pistato.v30029170 |
| Apiaceae | Apium graveolens | 2 | Ag11G03843, Ag6G00775 |
| Arecaceae | Cocos nucifera | 2 | COCNU_08G008270, COCNU_09G003500 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103706383, gene-LOC103714071 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.160.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G03971 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G32530.1, AT2G35330.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10006944m.g.v1.0, Thhalv10010162m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g28370.v2.2, Sp4g17530.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g035680.2N, BniB04g049040.2N, BniB06g008600.2N |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq01G0453, Ceq01G0455, Ceq05G0964 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G0481, Cgl05G0963 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g08650, gene.Cymno03g07890 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g05190 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-11363, nbisL1-mrna-11364, nbisL1-mrna-1536 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.720 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00030405 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G14564 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.1732, BH03.1896, CH03.2073 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0533690, gene-QOZ80_6BG0486750 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0477040.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_004815 |
| Poaceae | Oryza coarctata | 2 | Oco17G003570, Oco18G003590 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g20550.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G167200 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr11G011070, Chr14G013000, Chr21G012080 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G328800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG031730, gene_TRIDC5BG033400 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G189000.1, TraesCS5B02G194700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb311380_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19919 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32495 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.3086, evm.TU.LG10.782, evm.TU.LG16.463 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g19630 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.458 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-22711 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2934 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20093 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000022l.220 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014447 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3358 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6430 |
| Salicaceae | Populus euphratica | 2 | populus_peu03151, populus_peu34016 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609740 |
| Solanaceae | Solanum chilense | 1 | SOLCI005151400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107027377, gene-LOC107028637 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.23768_chr05_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G2813 |
| Zosteraceae | Zostera marina | 1 | Zosma06g20070.v3.1 |