Basic Information
Locus ID:
Ag6G00770
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Uncharacterized conserved domain (SAYSvFN)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 29810331 | 29816916 | + | Ag6G00770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.03 | 25,291.06 Da | 42.44 | 108.05 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 26 | 81 | 3.10753E-5 | - |
| Pfam | PF10260 | Uncharacterized conserved domain (SAYSvFN) | 150 | 216 | 3.8E-25 | IPR019387 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 9 | 77 | 6.08E-10 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 96 | 3.2E-8 | - |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 12 | 74 | 12.16077 | IPR000626 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35360.1 | ubiquitin family protein. | 0 |
| RefSeq | XP_017232673.1 | PREDICTED: uncharacterized protein LOC108206778 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A166F7X8 | Ubiquitin-like domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_008287 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 11.302094 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 11.945057 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 13.459287 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 14.201518 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 11.855744 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 19.091621 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 17.386065 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 18.688107 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 16.392244 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 14.606302 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 16.919163 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 18.560976 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 15.473042 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 15.057327 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 21.953068 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 17.584909 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 21.25172 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 12.720842 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 14.35329 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 13.13019 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 12.223317 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 22.16091 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 24.651773 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 25.64513 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 19.204578 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 17.910091 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 20.995516 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 15.494884 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 18.66169 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.161934 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 5.32137 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 5.398705 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 4.704265 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 8.913837 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 2.646667 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.464693 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.27666 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 5.365496 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 10.937689 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 7.884548 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.499958 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 21.295605 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 22.907351 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 24.742662 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 23.618952 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 28.187534 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 32.934853 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 23.990667 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 23.322716 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 24.356133 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg37343 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2090 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004235 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g106370 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24465, Sbi_jg8314 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11727 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001644 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51406, Sgl56649 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006154, gene:ENSEOMG00000022453 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.5BG0002890 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30028980, pistato.v30029090 |
| Apiaceae | Apium graveolens | 1 | Ag6G00770 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103714031 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.161.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G08763 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G35360.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10017211m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g17580.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g008580.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G0463 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0489 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g07820 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0054s00032.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g05130 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1539 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.703 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002970 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G08726, Lb2G14559, Lb5G28378 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.1230, BH03.1366, CH03.1540 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0523910, gene-QOZ80_6BG0476610 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0480340.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_005379 |
| Poaceae | Oryza coarctata | 1 | Oco18G012410 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g39980.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G084200, gene-BS78_K174900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0702001, Pt_Chr0702060 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr10G004490, Chr11G014460, Chr14G007500, Chr21G007570 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G349400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG034000, gene_TRIDC5BG035880 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G214100.1, TraesCS5B02G209600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb307090_P003 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-43702, nbis-gene-43703 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29783 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.765, evm.TU.LG17.774 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g27270, gene.Posoc02g19600 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.451 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-22705 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2940 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20099 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000022l.226 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014171 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3365 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6440 |
| Salicaceae | Populus euphratica | 1 | populus_peu34009 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609746 |
| Solanaceae | Solanum chilense | 1 | SOLCI001681800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107027089 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14922 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3772 |
| Zosteraceae | Zostera marina | 1 | Zosma05g21060.v3.1 |