Basic Information
Locus ID:
Ag6G00752
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 27792675 | 27795136 | - | Ag6G00752 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.41 | 35,696.68 Da | 55.71 | 80.40 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 275 | 311 | 1.3E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 251 | 323 | 2.9E-11 | IPR013083 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 1 | 323 | 2.4E-81 | IPR017066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 276 | 310 | 9.258371 | IPR001841 |
| Coils | Coil | Coil | 215 | 235 | - | - |
| Coils | Coil | Coil | 173 | 207 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32740.1 | SBP (S-ribonuclease binding protein) family protein. | 0 |
| RefSeq | XP_017231668.1 | PREDICTED: BOI-related E3 ubiquitin-protein ligase 1-like [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A166F8G0 | RING-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_008308 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 39.471783 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 31.119545 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 35.966343 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 34.487747 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 29.692268 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 29.644102 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 34.959881 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 40.82629 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 48.335342 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 48.730976 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 52.21722 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 80.683899 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 80.360382 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 96.421066 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 20.847719 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 26.263885 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 27.471529 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 20.062695 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 17.08819 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 34.52063 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 24.92704 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 26.388779 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 30.600815 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 36.105373 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 26.69628 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 19.319675 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 20.938774 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 12.896597 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 19.969698 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 85.255096 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 36.698822 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 30.37957 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 20.653238 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 36.700592 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 27.042648 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 19.483105 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 33.813717 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 31.241482 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 15.132856 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 16.706314 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.483169 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 16.624958 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 3.52502 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 2.177078 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 2.605934 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 5.632356 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 2.539135 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 37.879021 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 46.171463 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 52.542244 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg14153, jg34058 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2065 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004173 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g105630 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24405, Sbi_jg8242 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11780 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001580 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl51519, Sgl56804, Sgl56805 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007305, gene:ENSEOMG00000021890 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0003340, CQ.Regalona.r1.5BG0003490 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30141530 |
| Apiaceae | Apium graveolens | 2 | Ag11G03828, Ag6G00752 |
| Arecaceae | Cocos nucifera | 6 | COCNU_03G005620, COCNU_07G004460, COCNU_08G008380 ... |
| Arecaceae | Phoenix dactylifera | 5 | gene-LOC103704628, gene-LOC103706427, gene-LOC103710759 ... |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_04.1261.V1.1, AsparagusV1_08.352.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri13G06070, Ftri14G08274, Ftri3G22548 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G32740.1, AT4G17680.1, AT5G47050.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10000973m.g.v1.0, Thhalv10008231m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g28230.v2.2, Sp2g11860.v2.2, Sp7g16460.v2.2 |
| Brassicaceae | Brassica nigra | 6 | BniB02g063760.2N, BniB02g072540.2N, BniB04g010570.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G0784 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0573 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno15g04220, gene.Cymno18g03340 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g04210, gene.Thate08g08780 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11354 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1086 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G08676, Lb2G10545, Lb4G25580 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.2856, AH07.3040, BH01.3194, BH07.2864, CH01.3433 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_2AG0117150, gene-QOZ80_2AG0141320 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0057290.1, HORVU.MOREX.r3.6HG0605060.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_012781, gene-QYE76_024508, gene-QYE76_024550 |
| Poaceae | Oryza coarctata | 4 | Oco03G018490, Oco04G019230, Oco19G010520, Oco20G010350 |
| Poaceae | Oryza sativa | 4 | LOC_Os02g46220.1, LOC_Os03g03490.1, LOC_Os10g41580.1 ... |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G281400, gene-BS78_04G235200 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0203779, Pt_Chr0203794, Pt_Chr0503244, Pt_Chr0503287 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr06G004850, Chr06G027430, Chr09G005410, Chr09G023190 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G366400, Tel6E01G486100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG032540, gene_TRIDC6AG040200 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G215300.1, TraesCS1B02G228800.1 ... |
| Poaceae | Zea mays | 6 | Zm00001eb023970_P001, Zm00001eb103430_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-22226, nbis-gene-36404, nbis-gene-38046 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g12940, Zma_g14154, Zma_g15711, Zma_g16902 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.3134, evm.TU.LG10.810, evm.TU.LG16.512 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g05880 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_14_RagTag.465, evm.TU.Scaffold_16_RagTag.413 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-17895, nbisL1-mrna-22667 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-3830, nbisL1-mrna-5651 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-20126, nbisL1-mrna-8271 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000007l.100, evm.TU.utg000022l.245 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00014239, Maker00018604 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16209, nbisL1-mrna-3386 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10641, nbisL1-mrna-6466 |
| Salicaceae | Populus euphratica | 2 | populus_peu03101, populus_peu33973 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132609758, gene-LOC132635220, gene-LOC132640713 |
| Solanaceae | Solanum chilense | 3 | SOLCI000363400, SOLCI003998700, SOLCI007181500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107023755, gene-LOC107028844 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.16230_chr06_-, STRG.23857_chr05_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G3734, TC09G0392 |
| Zosteraceae | Zostera marina | 1 | Zosma06g05640.v3.1 |