Basic Information
Locus ID:
Ag6G00740
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 26980452 | 26983328 | + | Ag6G00740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.93 | 42,934.64 Da | 43.53 | 57.08 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 72 | 123 | 3.8E-15 | IPR013083 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 91 | 100 | - | IPR017907 |
| ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 128 | 151 | - | IPR013087 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 162 | 182 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 346 | 397 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 159 | 182 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01160.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_017231124.1 | PREDICTED: E3 ubiquitin-protein ligase Hakai-like [Daucus carota subsp. sativus] | 0 |
| Q9LFC0 | E3 ubiquitin-protein ligase HAKAI homolog OS=Arabidopsis thaliana OX=3702 GN=HAKAI PE=1 SV=1 | 0 | |
| TrEMBL | A0A166D5J1 | RING-type E3 ubiquitin transferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_005589 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.459754 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.090657 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.185144 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.326367 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.108503 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.078307 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.169553 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.148697 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.36355 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.136259 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.11675 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.104407 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.052622 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.10191 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.187889 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg3299 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19300 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000172 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g121260 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg31427, Sbi_jg57855 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25494 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00019586 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54438, Sgl59770 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006684, gene:ENSEOMG00000021530 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0026440, CQ.Regalona.r1.5BG0027990 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30285310 |
| Apiaceae | Apium graveolens | 4 | Ag10G01008, Ag11G03813, Ag6G00740, Ag6G00741 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G006960 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716379 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.3454.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G25965 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G01160.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10014073m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g40520.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g058050.2N, BniB05g031490.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1060 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1085 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g09210 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g00900 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1081 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002794 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G23499 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1719, BH01.1920, CH01.2179 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0112250, gene-QOZ80_2BG0165640 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0045980.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_011772 |
| Poaceae | Oryza coarctata | 2 | Oco19G006960, Oco20G006910 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g35190.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G189700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0502733, Pt_Chr0502788 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr06G030320, Chr15G021680 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G300200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG025220, gene_TRIDC1BG030260 |
| Poaceae | Triticum aestivum | 4 | TraesCS1A02G164400.1, TraesCS1B02G181200.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb044800_P001, Zm00001eb221140_P002 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-43946, nbis-gene-45312, nbis-gene-55609 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g12682, Zma_g15223, Zma_g22826 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.2915, evm.TU.LG02.1203, evm.TU.LG09.768 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g00850, gene.Posoc02g14870 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_1_RagTag.1757, evm.TU.Scaffold_2_RagTag.662 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-5550, nbisL1-mrna-5554, nbisL1-mrna-5558 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1422, nbisL1-mrna-18004 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-3743, nbisL1-mrna-9553, nbisL1-mrna-9554 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000009l.402, evm.TU.utg000016l.663 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016313 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4990 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13717 |
| Salicaceae | Populus euphratica | 1 | populus_peu11395 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132630658 |
| Solanaceae | Solanum chilense | 1 | SOLCI006105900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031314 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_319 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0896 |
| Zosteraceae | Zostera marina | 1 | Zosma04g23250.v3.1 |