Basic Information
Locus ID:
Ag6G00727
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
GATA transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 26650992 | 26656587 | + | Ag6G00727 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 61,600.24 Da | 57.42 | 72.87 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00202 | ZnF_GATA | 6 | 54 | 2.09467E-17 | IPR000679 |
| Pfam | PF00320 | GATA zinc finger | 7 | 41 | 3.9E-14 | IPR000679 |
| Pfam | PF13919 | Asx homology domain | 299 | 381 | 2.0E-10 | IPR028020 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 5 | 46 | 3.56E-11 | - |
| Gene3D | G3DSA:1.10.2020.20 | - | 302 | 399 | 2.1E-8 | IPR038108 |
| Gene3D | G3DSA:3.30.50.10 | - | 3 | 88 | 4.8E-14 | IPR013088 |
| SMART | SM00401 | GATA_3 | 1 | 55 | 2.6E-10 | IPR000679 |
| ProSiteProfiles | PS50114 | GATA-type zinc finger domain profile. | 7 | 40 | 11.345171 | IPR000679 |
| ProSiteProfiles | PS51916 | DEUBAD (DEUBiquitinase ADaptor) domain profile. | 309 | 421 | 14.159413 | IPR044867 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 268 | 287 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 443 | 464 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17570.3 | GATA transcription factor 26. Encodes a member of the GATA factor family of zinc finger transcription factors. | 0 |
| RefSeq | XP_017236942.1 | PREDICTED: GATA transcription factor 26-like [Daucus carota subsp. sativus] | 0 |
| Q8W4H1 | GATA transcription factor 26 OS=Arabidopsis thaliana OX=3702 GN=GATA26 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166F953 | GATA-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_008333 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 9.098179 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 6.983423 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 5.103337 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 6.31123 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 6.100602 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 5.717906 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 5.39105 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 5.600876 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 14.219324 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 15.146699 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 15.06755 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 14.813063 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 13.231808 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 11.915052 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 7.093431 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 6.905411 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 8.998866 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 11.645391 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 5.56974 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 15.478168 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 18.724642 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 11.367724 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 12.990188 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 11.958621 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 10.934758 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 11.124269 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 9.369712 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 11.296412 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 10.985126 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.116753 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.578245 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 5.080263 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 10.576895 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 8.25575 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 13.769628 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 10.126457 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 7.958744 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 9.882364 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 6.577428 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 9.349417 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 12.319985 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 20.119019 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 23.560919 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 9.861133 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 12.704768 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 18.457277 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 16.614019 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 8.116051 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 7.600783 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 8.736498 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg4910, jg7540 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14932 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004113 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g105170 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg24260, Sbi_jg51725, Sbi_jg8091 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11928 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00010825, GOSA_00010826 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51156, Sgl56460 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000005581, gene:ENSEOMG00000021859 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0003820, CQ.Regalona.r1.5BG0004120 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30141900 |
| Apiaceae | Apium graveolens | 3 | Ag6G00727, Ag7G00180, Ag9G02756 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G004740, COCNU_10G003340 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103704605, gene-LOC103710795 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_10.637.V1.1, AsparagusV1_Unassigned.106.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G33824, Ftri7G21251 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G17570.2, AT5G47140.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000871m.g.v1.0, Thhalv10024940m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g11950.v2.2, Sp7g16590.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB02g063830.2N, BniB04g010380.2N, BniB04g015200.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0702 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G0791, Cgl03G0801 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g05130 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g12590, gene.Thate08g17730 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-11342, nbisL1-mrna-1550 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1127 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004124 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G08587 |
| Poaceae | Echinochloa crus-galli | 6 | AH09.1402, AH09.1770, BH09.1589, BH09.1957, CH09.1709 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0308660, gene-QOZ80_4BG0339640 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0185510.1, HORVU.MOREX.r3.2HG0217760.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_045307 |
| Poaceae | Oryza coarctata | 2 | Oco07G012070, Oco08G011760 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g46020.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_06G176800, gene-BS78_09G245200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0201647, Pt_Chr0301841 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr19G016550, Chr23G007450, Chr26G012310 |
| Poaceae | Thinopyrum elongatum | 5 | Tel2E01G1032100, Tel2E01G1034000, Tel2E01G1034300 ... |
| Poaceae | Triticum dicoccoides | 8 | gene_TRIDC2AG056640, gene_TRIDC2AG081510 ... |
| Poaceae | Triticum aestivum | 11 | TraesCS2A02G391700.1, TraesCS2A02G561200.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb075150_P002, Zm00001eb427850_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-37232, nbis-gene-5452 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g20163, Zma_g21725 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.3172, evm.TU.LG04.3173, evm.TU.LG16.428 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g09370, gene.Posoc06g11030 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_14_RagTag.413, evm.TU.Scaffold_16_RagTag.386 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-17955, nbisL1-mrna-22645 |
| Rhizophoraceae | Ceriops tagal | 5 | nbisL1-mrna-11833, nbisL1-mrna-16863, nbisL1-mrna-17322 ... |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-20150, nbisL1-mrna-8314 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000007l.125, evm.TU.utg000022l.259 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00014419, Maker00018404 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16179, nbisL1-mrna-3400 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10678, nbisL1-mrna-6490 |
| Salicaceae | Populus euphratica | 2 | populus_peu03065, populus_peu33943 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132609771, gene-LOC132635177, gene-LOC132640846 |
| Solanaceae | Solanum chilense | 3 | SOLCI001682700, SOLCI004741300, SOLCI007288400 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107023215, gene-LOC107028969, gene-LOC107029107 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_14893, gene_16164 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G2778, TC09G0431 |