Basic Information
Locus ID:
Ag6G00710
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Transducin WD40 repeat-like superfamily protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 25933554 | 25945477 | - | Ag6G00710 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 168,446.98 Da | 48.32 | 91.35 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 573 | 614 | 7.2E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 15 | 330 | 5.37E-10 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 17 | 729 | 1.83E-29 | IPR036322 |
| SUPERFAMILY | SSF48371 | ARM repeat | 1012 | 1368 | 1.41E-5 | IPR016024 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 1351 | 1439 | 1.43E-5 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 521 | 828 | 2.7E-20 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 17 | 293 | 5.5E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 566 | 614 | 3.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 53 | 115 | 9.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 665 | 712 | 17.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1400 | 1436 | 26.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 5 | 44 | 1.9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 573 | 623 | 10.642123 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 601 | 615 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 778 | 802 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11270.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_017234700.1 | PREDICTED: uncharacterized protein LOC108208690 isoform X1 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A166F9M9 | WD_REPEATS_REGION domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_008351 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 11.151525 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 8.868822 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 24.239464 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 25.841982 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 26.216574 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 9.731952 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 6.967229 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.800536 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 14.85813 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 13.28793 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 15.672744 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 11.380922 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 13.853176 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 10.654301 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 9.440909 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 9.813487 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 9.87621 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 12.358744 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 8.209743 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 10.646549 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 11.536222 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 9.463948 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 11.98734 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 9.672407 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 10.529172 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 12.99654 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 11.885881 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 10.28756 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 13.025757 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.998061 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.988973 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.592126 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 4.437501 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 3.540559 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 3.984801 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.378589 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.429133 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.486679 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 8.156992 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 5.648196 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.712709 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 4.522653 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 8.594155 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 15.245894 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 14.381137 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 4.343792 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 18.570465 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 9.19549 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 11.926607 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 11.726675 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg25525, jg37066 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1792 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004549 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g099790 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg23946, Sbi_jg7771 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12252 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001132 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl52120, Sgl57389 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006074, gene:ENSEOMG00000023804 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0006700, CQ.Regalona.r1.5BG0006980 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30135350 |
| Apiaceae | Apium graveolens | 1 | Ag6G00710 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G012310 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710884 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.1424.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G06645 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G11270.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028363m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g06170.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g050460.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0269 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0318 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g02210 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g15690 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1461 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005273 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G22007, Lb4G22073 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.1744, BH06.1644, CH06.1814 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_6AG0530530, gene-QOZ80_6AG0530540 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0710750.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_033964 |
| Poaceae | Oryza coarctata | 2 | Oco11G009940, Oco12G009920 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g22550.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G142000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0400089 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr14G011460, Chr21G011630 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G579800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG047820, gene_TRIDC7BG039610 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G342200.1, TraesCS7B02G240600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb382730_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-35436 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32308 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.457, evm.TU.LG17.454 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc09g07880, gene.Posoc09g07900 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.136 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-22380 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4410 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20352 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000022l.409 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014268 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3549 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6715 |
| Salicaceae | Populus euphratica | 4 | populus_peu03616, populus_peu03617, populus_peu34459 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132634845 |
| Solanaceae | Solanum chilense | 1 | SOLCI005250400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028671 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14759 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3193 |
| Zosteraceae | Zostera marina | 2 | Zosma05g03780.v3.1, Zosma05g13710.v3.1 |