Basic Information
Locus ID:
Ag6G00683
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
disease resistance
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 24773782 | 24774677 | + | Ag6G00683 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.60 | 25,922.62 Da | 35.57 | 89.35 | 0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017233774.1 | PREDICTED: uncharacterized protein LOC108207856 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A166FAH6 | Transmembrane protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_008387 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.123533 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.152229 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0.195932 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.06833 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.147939 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.16653 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.58728 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.454309 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 1.796306 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 2.496502 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 3.407555 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.175453 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.105884 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.08174 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.263473 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg24528, jg37782 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_17864, gene_5147 |
| Amaranthaceae | Atriplex hortensis | 13 | Ah008527, Ah008528, Ah008529, Ah008530, Ah008532, Ah008533 ... |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg18845, Sbi_jg18857, Sbi_jg18858, Sbi_jg37282 ... |
| Amaranthaceae | Salicornia europaea | 4 | Seu_jg5100, Seu_jg5102, Seu_jg5103, Seu_jg5105 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007006, GOSA_00007041 |
| Amaranthaceae | Suaeda glauca | 13 | Sgl22807, Sgl22808, Sgl22936, Sgl23719, Sgl23723, Sgl23724 ... |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011102, gene:ENSEOMG00000030016 ... |
| Amaranthaceae | Chenopodium quinoa | 10 | CQ.Regalona.r1.4AG0021420, CQ.Regalona.r1.4AG0021440 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30088130, pistato.v30157740 |
| Apiaceae | Apium graveolens | 3 | Ag6G00683, Ag9G00940, Ag9G00941 |
| Arecaceae | Cocos nucifera | 1 | scaffold010088G000060 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103717679 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G23939, Ftri2G16588 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT3G20590.1, AT3G20600.1, AT3G20610.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10021500m.g.v1.0, Thhalv10022399m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 4 | Sp3g18610.v2.2, Sp3g18630.v2.2, Sp3g18640.v2.2 ... |
| Brassicaceae | Brassica nigra | 4 | BniB01g043180.2N, BniB01g043190.2N, BniB07g031440.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq01G1241, Ceq01G1242, Ceq01G1244 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G1379, Cgl01G1380 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g18910 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9125 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG05.1793, evm.TU.LG05.1794 |
| Plantaginaceae | Plantago ovata | 8 | Pov_00005874, Pov_00020952, Pov_00020953, Pov_00020954 ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G03322 |
| Portulacaceae | Portulaca oleracea | 8 | evm.TU.LG01.2009, evm.TU.LG01.2010, evm.TU.LG13.462 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.304 |
| Rhizophoraceae | Carallia pectinifolia | 5 | nbisL1-mrna-11039, nbisL1-mrna-11049, nbisL1-mrna-11054 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5310 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7193 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000003l.122 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009423 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-19471, nbisL1-mrna-22099 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-12640, nbisL1-mrna-23577 |
| Salicaceae | Populus euphratica | 2 | populus_peu00371, populus_peu17412 |
| Solanaceae | Lycium barbarum | 5 | gene-LOC132629266, gene-LOC132629269, gene-LOC132629270 ... |
| Solanaceae | Solanum chilense | 3 | SOLCI003691400, SOLCI003875600, SOLCI006667900 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107007710, gene-LOC107013635, gene-LOC107013646 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.24820_chr08_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G2877, TC05G2888 |