Basic Information
Locus ID:
Ag6G00673
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 23647882 | 23652622 | + | Ag6G00673 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 73,842.21 Da | 36.88 | 97.77 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 374 | 639 | 1.2E-17 | IPR001245 |
| Pfam | PF00560 | Leucine Rich Repeat | 132 | 153 | 1.8 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 38 | 78 | 1.3E-9 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 39 | 248 | 1.22E-35 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 364 | 648 | 2.45E-36 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 453 | 661 | 5.3E-31 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 39 | 152 | 8.7E-29 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 351 | 452 | 6.5E-14 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 153 | 266 | 2.6E-16 | IPR032675 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 371 | 647 | 18.506365 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G63430.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_017234990.1 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g63430 [Daucus carota subsp. sativus] | 0 |
| C0LGH8 | Probable LRR receptor-like serine/threonine-protein kinase At1g63430 OS=Arabidopsis thaliana OX=3702 GN=At1g63430 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166FAY2 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_008405 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.158234 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.025647 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.559971 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 1.073028 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.943979 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.485261 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.35012 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.360361 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 34.104607 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 34.649799 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 33.890965 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 41.728764 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 35.778759 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 26.293531 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 56.159119 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 62.785847 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 66.487671 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 41.709167 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 44.512146 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 26.848141 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 26.852659 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 52.664745 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 62.18758 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 50.218212 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 49.245258 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 46.176743 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 51.668198 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 41.444824 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 51.345734 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 8.980297 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 13.816689 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 12.88897 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 6.840812 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 17.44611 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.832334 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 7.59669 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 5.473954 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 5.090118 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 37.271378 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 16.454243 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 11.140137 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 3.3738 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 16.168217 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 48.945168 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 30.440384 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 3.933192 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 64.09449 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 37.49559 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 33.025455 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 32.172863 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg23447, jg4821 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1852 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004664 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_5g100530, BVRB_5g113250 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg23765, Sbi_jg7597 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12425 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001232 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51956, Sgl57245 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007503, gene:ENSEOMG00000020912 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.5AG0008070, CQ.Regalona.r1.5BG0008200 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30136960 |
| Apiaceae | Apium graveolens | 2 | Ag6G00673, Ag9G02824 |
| Arecaceae | Cocos nucifera | 3 | COCNU_07G011910, COCNU_08G010300, COCNU_09G007600 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103698483, gene-LOC103719414, gene-LOC103724369 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.901.V1.1, AsparagusV1_07.2181.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri16G05840, Ftri2G33327, Ftri3G03841, Ftri7G27772 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G63430.2, AT5G41180.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10023393m.g.v1.0, Thhalv10027677m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp2g01180.v2.2, Sp7g00730.v2.2, SpUn0010_0210.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB02g058440.2N, BniB03g070570.2N, BniB04g024230.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0408 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0505 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno03g05860, gene.Cymno10g02020 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g06600, gene.Thate03g11280 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1605 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1393 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00003161, Pov_00030547 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G10716, Lb8G35671 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2749, BH09.2994, CH07.1963 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0298960, gene-QOZ80_4BG0329640 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0214260.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_016779, gene-QYE76_047580 |
| Poaceae | Oryza coarctata | 2 | Oco07G019600, Oco08G018890 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g58700.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G288800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0307026 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr23G000620, Chr26G018610 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G987300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG079550, gene_TRIDC2BG087850 |
| Poaceae | Triticum aestivum | 4 | TraesCS2A02G580000.2, TraesCS2A02G593500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb065760_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-23231, nbis-gene-6231 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g20714, Zma_g22258 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.3398, evm.TU.LG16.199, evm.TU.LG18.583 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g14260, gene.Posoc06g05200 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_14_RagTag.199, evm.TU.Scaffold_16_RagTag.199 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-18193 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13422, nbisL1-mrna-6270 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-20305, nbisL1-mrna-8510 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000007l.249, evm.TU.utg000022l.375 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00014364, Maker00018585 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16054, nbisL1-mrna-3518 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10883, nbisL1-mrna-6672 |
| Salicaceae | Populus euphratica | 2 | populus_peu03541, populus_peu34375 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132603845, gene-LOC132634930 |
| Solanaceae | Solanum chilense | 1 | SOLCI001106700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107005506, gene-LOC107028806 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_12254, gene_13921 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G4306 |
| Zosteraceae | Zostera marina | 2 | Zosma01g24110.v3.1, Zosma05g26660.v3.1 |