halophFGD

Basic Information

Locus ID: Ag6G00638

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Blue copper

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	22953379	23010312	+	Ag6G00638

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.62	30,917.99 Da	30.89	81.11	0.15

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd04216	Phytocyanin	23	121	2.50798E-37	-
CDD	cd04216	Phytocyanin	151	247	2.66074E-36	-
Pfam	PF02298	Plastocyanin-like domain	159	239	4.3E-23	IPR003245
Pfam	PF02298	Plastocyanin-like domain	33	113	4.3E-23	IPR003245
SUPERFAMILY	SSF49503	Cupredoxins	22	122	9.53E-30	IPR008972
SUPERFAMILY	SSF49503	Cupredoxins	150	248	1.01E-28	IPR008972
Gene3D	G3DSA:2.60.40.420	-	149	252	2.6E-30	IPR008972
Gene3D	G3DSA:2.60.40.420	-	21	126	2.2E-31	IPR008972
ProSiteProfiles	PS51485	Phytocyanin domain profile.	149	249	34.333107	IPR003245
ProSiteProfiles	PS51485	Phytocyanin domain profile.	23	123	34.966183	IPR003245

Gene Ontology

Molecular Function:

GO:0009055 (electron transfer activity)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G26330.1	Cupredoxin superfamily protein.
RefSeq	XP_040990424.1	blue copper protein 1a-like [Juglans microcarpa x Juglans regia]
Swiss-Prot	A0A0M4FTF3	Blue copper protein OS=Petunia hybrida OX=4102 GN=BCP PE=2 SV=1
TrEMBL	A0A5N6PHR5	Phytocyanin domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_08181 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.383479	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.040757	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.015883	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.090786	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0.190375	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.201391		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.392046		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.112441		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.923466		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.149452		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.278288	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.093314	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.062838	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.705687	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.059414	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.225287	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.045132	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.469951	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.074367	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg37190, jg37191, jg7574
Anacardiaceae	Pistacia vera	4	pistato.v30086440, pistato.v30087770, pistato.v30087780 ... pistato.v30143270
Apiaceae	Apium graveolens	7	Ag10G02133, Ag1G01453, Ag6G00637, Ag6G00638, Ag6G01774 ... Ag6G01777, AgUnG00494
Arecaceae	Phoenix dactylifera	4	gene-LOC103697901, gene-LOC103707029, gene-LOC103714900 ... gene-LOC120104319
Asparagaceae	Asparagus officinalis	11	AsparagusV1_03.458.V1.1, AsparagusV1_03.459.V1.1 ... AsparagusV1_03.460.V1.1, AsparagusV1_03.461.V1.1, AsparagusV1_03.462.V1.1, AsparagusV1_03.464.V1.1, AsparagusV1_03.465.V1.1, AsparagusV1_07.1918.V1.1, AsparagusV1_07.2752.V1.1, AsparagusV1_07.3343.V1.1, AsparagusV1_Unassigned.637.V1.1
Asteraceae	Flaveria trinervia	17	Ftri14G02725, Ftri14G17097, Ftri14G30070, Ftri16G05406 ... Ftri16G31405, Ftri3G12022, Ftri3G12034, Ftri3G20290, Ftri7G00060, Ftri7G31109, Ftri7G31877, FtriNA00074, FtriNA03207, FtriNA10708, FtriNA11919, FtriNA15330, FtriNA23990
Brassicaceae	Arabidopsis thaliana	1	AT3G17675.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10021757m.g.v1.0
Brassicaceae	Brassica nigra	1	BniB01g047140.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq03G0517, Ceq03G0518, Ceq03G0519
Casuarinaceae	Casuarina glauca	3	Cgl03G0626, Cgl03G0627, Cgl03G0628
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-11284, nbisL1-mrna-7964, nbisL1-mrna-7977
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG10.1292, evm.TU.LG10.1293, evm.TU.LG10.1294 ... evm.TU.LG10.1295
Plantaginaceae	Plantago ovata	6	Pov_00004705, Pov_00029093, Pov_00029094, Pov_00029095 ... Pov_00029099, Pov_00029103
Poaceae	Echinochloa crus-galli	16	AH01.162, AH01.172, AH01.173, AH03.317, AH03.321, BH03.3909 ... BH03.3923, BH03.3924, BH03.401, CH01.427, CH01.428, CH01.437, CH01.442, CH03.466, CH03.468, CH03.469
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_3AG0213000, gene-QOZ80_3AG0213100 ... gene-QOZ80_3BG0258150, gene-QOZ80_3BG0258250, gene-QOZ80_7AG0556800, gene-QOZ80_7AG0556810, gene-QOZ80_7BG0587690, gene-QOZ80_7BG0587710
Poaceae	Hordeum vulgare	10	HORVU.MOREX.r3.5HG0514750.1, HORVU.MOREX.r3.5HG0517390.1 ... HORVU.MOREX.r3.5HG0517400.1, HORVU.MOREX.r3.5HG0517410.1, HORVU.MOREX.r3.5HG0517420.1, HORVU.MOREX.r3.5HG0517430.1, HORVU.MOREX.r3.5HG0517660.1, HORVU.MOREX.r3.5HG0517710.1, HORVU.MOREX.r3.5HG0517730.1, HORVU.MOREX.r3.5HG0517770.1
Poaceae	Lolium multiflorum	5	gene-QYE76_000714, gene-QYE76_042640, gene-QYE76_042641 ... gene-QYE76_061279, gene-QYE76_061445
Poaceae	Oryza coarctata	4	Oco05G025710, Oco06G026550, Oco06G026560, Oco14G002160
Poaceae	Oryza sativa	3	LOC_Os03g57730.1, LOC_Os03g57740.1, LOC_Os07g07170.1
Poaceae	Paspalum vaginatum	7	gene-BS78_01G053900, gene-BS78_01G054800, gene-BS78_K325500 ... gene-BS78_02G043500, gene-BS78_02G043600, gene-BS78_02G043700, gene-BS78_K325600
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0105330, Pt_Chr0303611, Pt_Chr0303612
Poaceae	Sporobolus alterniflorus	1	Chr19G017550
Poaceae	Thinopyrum elongatum	14	Tel1E01G505400, Tel2E01G453300, Tel5E01G651600 ... Tel5E01G651700, Tel5E01G670700, Tel5E01G670800, Tel5E01G670900, Tel5E01G671000, Tel5E01G671200, Tel5E01G673100, Tel5E01G673200, Tel5E01G673500, Tel5E01G673600, Tel5E01G673900
Poaceae	Triticum dicoccoides	7	gene_TRIDC5AG061900, gene_TRIDC5AG062090 ... gene_TRIDC5AG062150, gene_TRIDC5BG066080, gene_TRIDC5BG066090, gene_TRIDC5BG066290, gene_TRIDC5BG066310
Poaceae	Triticum aestivum	31	TraesCS1A02G312900.1, TraesCS1B02G324700.1 ... TraesCS1D02G313100.1, TraesCS1D02G313400.1, TraesCS2A02G247400.1, TraesCS5A02G415200.1, TraesCS5A02G415300.1, TraesCS5A02G428500.1, TraesCS5A02G428600.1, TraesCS5A02G430200.1, TraesCS5A02G430500.1, TraesCS5A02G430600.1, TraesCS5A02G430900.1, TraesCS5B02G417800.1, TraesCS5B02G430400.1, TraesCS5B02G430500.1, TraesCS5B02G430600.1, TraesCS5B02G432000.1, TraesCS5B02G432100.1, TraesCS5B02G432200.1, TraesCS5B02G432300.1, TraesCS5B02G432400.1, TraesCS5B02G432500.1, TraesCS5D02G423100.1, TraesCS5D02G423200.1, TraesCS5D02G436500.1, TraesCS5D02G436600.1, TraesCS5D02G436700.1, TraesCS5D02G438100.1, TraesCS5D02G438200.1, TraesCS5D02G438500.1
Poaceae	Zea mays	7	Zm00001eb060320_P001, Zm00001eb117160_P001 ... Zm00001eb300790_P001, Zm00001eb300810_P001, Zm00001eb300820_P001, Zm00001eb300840_P001, Zm00001eb300850_P001
Poaceae	Zoysia japonica	4	nbis-gene-15315, nbis-gene-16440, nbis-gene-35718 ... nbis-gene-35719
Poaceae	Zoysia macrostachya	4	Zma_g2596, Zma_g315, Zma_g4776, Zma_g4777
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_14_RagTag.274
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-18107, nbisL1-mrna-2970, nbisL1-mrna-2971 ... nbisL1-mrna-2973, nbisL1-mrna-3194
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-17705, nbisL1-mrna-3926
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-8443
Rhizophoraceae	Kandelia candel	2	add.evm.TU.utg000007l.128, add.evm.TU.utg000009l.78
Rhizophoraceae	Kandelia obovata	1	Maker00005083
Salicaceae	Populus euphratica	8	populus_peu03465, populus_peu15821, populus_peu15823 ... populus_peu16039, populus_peu16106, populus_peu19362, populus_peu19363, populus_peu37505
Solanaceae	Lycium barbarum	9	gene-LOC132601773, gene-LOC132601774, gene-LOC132601775 ... gene-LOC132601776, gene-LOC132601778, gene-LOC132607272, gene-LOC132637104, gene-LOC132637106, gene-LOC132639949
Solanaceae	Solanum chilense	2	SOLCI003510600, SOLCI004273000
Solanaceae	Solanum pennellii	3	gene-LOC107002088, gene-LOC107006554, gene-LOC107028085
Tamaricaceae	Reaumuria soongarica	1	gene_16565