halophFGD

Basic Information

Locus ID: Ag6G00588

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: LRR receptor-like serine threonine-protein kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	20973289	20975628	-	Ag6G00588

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.29	66,385.22 Da	39.47	99.09	-0.10

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00069	Protein kinase domain	342	590	1.5E-31	IPR000719
Pfam	PF08263	Leucine rich repeat N-terminal domain	25	60	6.4E-10	IPR013210
SUPERFAMILY	SSF52058	L domain-like	39	209	1.25E-35	-
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	342	592	7.01E-50	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	406	604	1.6E-40	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	180	229	2.6E-8	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	23	179	1.4E-40	IPR032675
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	299	405	8.5E-16	-
ProSiteProfiles	PS50011	Protein kinase domain profile.	300	599	28.668711	IPR000719
ProSiteProfiles	PS51450	Leucine-rich repeat profile.	162	184	7.727356	IPR001611
MobiDBLite	mobidb-lite	consensus disorder prediction	274	303	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G48480.1	receptor-like kinase 1. Arabidopsis thaliana receptor-like protein kinase (RKL1) gene
RefSeq	XP_017232907.1	PREDICTED: probable inactive receptor kinase RLK902 [Daucus carota subsp. sativus]
Swiss-Prot	Q9LP77	Probable inactive receptor kinase At1g48480 OS=Arabidopsis thaliana OX=3702 GN=RKL1 PE=1 SV=1
TrEMBL	A0A166EFA4	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_007324 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.71972	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.192317	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	1.17221	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	1.478602	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	1.510301	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.316403	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.242256	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	3.82715	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	2.273763	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	3.116298	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0.39608	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	1.532982	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.386899	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	1.103764	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	1.495048	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.076507	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	8.989489	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.865434	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	24.340403	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	23.610842	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.992794	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.595864	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	1.676073	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	1.390716	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.463276	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.433438	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.194858	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.611182		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.083676		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.15417		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	28.249166		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	18.061998		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	50.551624		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	5.96843		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	2.546656		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	4.558237		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	1.327008	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	1.83601	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	13.035268	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	9.568464	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	1.707408	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	2.333209	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	8.754789	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	3.026597	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	1.907353	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.768126	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.849281	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	10	jg13417, jg17099, jg20012, jg25558, jg25817, jg27091, jg5143 ... jg31036, jg39583, jg7360
Aizoaceae	Mesembryanthemum crystallinum	2	gene_1156, gene_24720
Amaranthaceae	Atriplex hortensis	3	Ah023589, Ah028848, Ah033325
Amaranthaceae	Beta vulgaris	2	BVRB_1g005410, BVRB_2g039200
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg19507, Sbi_jg28953, Sbi_jg2986, Sbi_jg44057
Amaranthaceae	Salicornia europaea	2	Seu_jg17898, Seu_jg6896
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00000942, GOSA_00010611
Amaranthaceae	Suaeda glauca	4	Sgl11836, Sgl15933, Sgl64817, Sgl69279
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000013294, gene:ENSEOMG00000015178 ... gene:ENSEOMG00000017712, gene:ENSEOMG00000033516, gene:ENSEOMG00000050042, gene:ENSEOMG00000050553
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1AG0009760, CQ.Regalona.r1.1BG0016000 ... CQ.Regalona.r1.2AG0007850, CQ.Regalona.r1.2BG0009230
Anacardiaceae	Pistacia vera	2	pistato.v30148970, pistato.v30190180
Apiaceae	Apium graveolens	7	Ag10G02909, Ag11G05065, Ag3G01039, Ag3G01056, Ag6G00588 ... Ag7G01530, Ag7G02026
Arecaceae	Cocos nucifera	5	COCNU_02G005350, COCNU_02G008470, COCNU_03G009790 ... scaffold062488G000010, scaffold062488G000020
Arecaceae	Phoenix dactylifera	4	gene-LOC103695856, gene-LOC103701099, gene-LOC103717354 ... gene-LOC103723357
Asparagaceae	Asparagus officinalis	5	AsparagusV1_03.1561.V1.1, AsparagusV1_04.50.V1.1 ... AsparagusV1_05.2283.V1.1, AsparagusV1_06.548.V1.1, AsparagusV1_08.1259.V1.1
Asteraceae	Flaveria trinervia	3	Ftri13G01034, Ftri18G26677, Ftri8G02804
Brassicaceae	Arabidopsis thaliana	4	AT1G48480.1, AT3G02880.1, AT3G17840.1, AT5G16590.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10011300m.g.v1.0, Thhalv10012966m.g.v1.0 ... Thhalv10020262m.g.v1.0, Thhalv10020304m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g35430.v2.2, Sp3g01920.v2.2, Sp3g15960.v2.2 ... Sp6g27580.v2.2
Brassicaceae	Brassica nigra	7	BniB01g046950.2N, BniB01g061510.2N, BniB02g046280.2N ... BniB05g022580.2N, BniB07g007430.2N, BniB07g052340.2N, BniB07g061020.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq03G2804, Ceq08G0627
Casuarinaceae	Casuarina glauca	2	Cgl03G2958, Cgl08G0599
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno05g11540, gene.Cymno09g02460, gene.Cymno11g08540
Hydrocharitaceae	Thalassia testudinum	7	gene.Thate01g10530, gene.Thate01g11630, gene.Thate02g25670 ... gene.Thate04g21390, gene.Thate04g24080, gene.Thate05g23660, gene.Thate08g18350
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-6524
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.619, evm.TU.LG10.145
Plantaginaceae	Plantago ovata	4	Pov_00019978, Pov_00019979, Pov_00021142, Pov_00033187
Plumbaginaceae	Limonium bicolor	3	Lb1G02086, Lb1G02122, Lb3G16648
Poaceae	Echinochloa crus-galli	6	AH01.4486, AH01.843, BH01.986, CH01.1033, CH01.5100 ... Contig192.128
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_3AG0219010, gene-QOZ80_3AG0239310 ... gene-QOZ80_3BG0264230, gene-QOZ80_3BG0288730
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.4HG0337200.1, HORVU.MOREX.r3.4HG0344020.1 ... HORVU.MOREX.r3.4HG0395580.1
Poaceae	Lolium multiflorum	2	gene-QYE76_062429, gene-QYE76_069729
Poaceae	Oryza coarctata	4	Oco05G006810, Oco05G021720, Oco06G007030, Oco06G022490
Poaceae	Oryza sativa	2	LOC_Os03g12250.1, LOC_Os03g50450.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G106300, gene-BS78_01G433900
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0101805, Pt_Chr0101842, Pt_Chr0105032
Poaceae	Sporobolus alterniflorus	8	Chr01G007030, Chr01G028160, Chr04G001090, Chr04G027030 ... Chr07G010330, Chr07G026000, Chr12G011270, Chr12G030440
Poaceae	Thinopyrum elongatum	2	Tel4E01G083300, Tel4E01G412900
Poaceae	Triticum dicoccoides	4	gene_TRIDC4AG008750, gene_TRIDC4AG041730 ... gene_TRIDC4BG007320, gene_TRIDC4BG042350
Poaceae	Triticum aestivum	6	TraesCS4A02G064200.1, TraesCS4A02G267300.1 ... TraesCS4B02G047100.1, TraesCS4B02G241500.1, TraesCS4D02G046900.1, TraesCS4D02G241100.1
Poaceae	Zea mays	11	Zm00001eb054960_P001, Zm00001eb076660_P001 ... Zm00001eb130540_P001, Zm00001eb216290_P001, Zm00001eb285120_P001, Zm00001eb305120_P001, Zm00001eb375360_P001, Zm00001eb393100_P001, Zm00001eb399890_P002, Zm00001eb399900_P002, Zm00001eb411560_P001
Poaceae	Zoysia japonica	5	nbis-gene-14829, nbis-gene-15924, nbis-gene-2435 ... nbis-gene-4035, nbis-gene-57036
Poaceae	Zoysia macrostachya	4	Zma_g1753, Zma_g2953, Zma_g4125, Zma_g642
Portulacaceae	Portulaca oleracea	6	evm.TU.LG01.720, evm.TU.LG04.1617, evm.TU.LG04.56 ... evm.TU.LG05.1276, evm.TU.LG10.1282, evm.TU.LG25.6
Posidoniaceae	Posidonia oceanica	4	gene.Posoc01g24600, gene.Posoc02g27890, gene.Posoc08g00570 ... gene.Posoc08g00840
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_11_RagTag.756, evm.TU.Scaffold_3_RagTag.1872 ... evm.TU.Scaffold_4_RagTag.683, evm.TU.Scaffold_6_RagTag.1307
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-14429, nbisL1-mrna-16303, nbisL1-mrna-28679
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-3256, nbisL1-mrna-4583, nbisL1-mrna-7179
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-1148, nbisL1-mrna-12364, nbisL1-mrna-1684
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000008l.438, evm.TU.utg000011l.852 ... evm.TU.utg000061l.35
Rhizophoraceae	Kandelia obovata	3	Maker00000169, Maker00007527, Maker00008636
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-13451, nbisL1-mrna-14466, nbisL1-mrna-18084 ... nbisL1-mrna-919
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-1645, nbisL1-mrna-3927, nbisL1-mrna-8424 ... nbisL1-mrna-8631
Salicaceae	Populus euphratica	6	populus_peu02286, populus_peu02287, populus_peu09671 ... populus_peu24853, populus_peu28222, populus_peu29687
Solanaceae	Lycium barbarum	4	gene-LOC132599688, gene-LOC132614133, gene-LOC132625801 ... gene-LOC132644365
Solanaceae	Solanum chilense	4	SOLCI001789600, SOLCI002608400, SOLCI005609200 ... SOLCI006474700
Solanaceae	Solanum pennellii	4	gene-LOC107004705, gene-LOC107008537, gene-LOC107014432 ... gene-LOC107023065
Tamaricaceae	Reaumuria soongarica	2	STRG.17829_chr09_-, STRG.21656_chr08_+
Tamaricaceae	Tamarix chinensis	1	TC05G1822
Zosteraceae	Zostera marina	2	Zosma03g35770.v3.1, Zosma06g09330.v3.1