Basic Information
Locus ID:
Ag6G00582
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 20753246 | 20757216 | + | Ag6G00582 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.19 | 44,576.19 Da | 37.67 | 81.29 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 56 | 322 | 2.1679E-95 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 53 | 317 | 1.5E-48 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 34 | 347 | 1.09E-79 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 14 | 125 | 4.7E-37 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 126 | 328 | 2.0E-57 | - |
| SMART | SM00220 | serkin_6 | 50 | 327 | 7.6E-28 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 50 | 324 | 37.389389 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 171 | 183 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 402 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 392 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G70740.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_017232066.1 | PREDICTED: putative receptor-like protein kinase At4g00960 [Daucus carota subsp. sativus] | 0 |
| Q9CAC3 | Cysteine-rich receptor-like protein kinase 43 OS=Arabidopsis thaliana OX=3702 GN=CRK43 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6P4AI64 | putative receptor-like protein kinase At4g00960 OS=Ziziphus jujuba OX=326968 GN=LOC107429294 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 4.333816 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 3.225331 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.433044 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 4.621789 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.660383 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 6.795479 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.805973 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 8.708228 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 21.114996 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 22.414623 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 23.034561 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 8.277336 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 9.695392 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 6.702573 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 33.176281 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 54.613548 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 10.599653 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 15.366776 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 31.923645 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 47.727283 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 18.69212 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 10.160593 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 10.163955 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 14.18984 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 14.224458 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 5.558626 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 7.745387 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 4.24873 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 3.267815 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.917297 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 6.255465 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.038716 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 7.042213 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 6.685434 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 10.963536 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 4.183211 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.150454 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.982049 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 4.578714 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 2.971825 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.861117 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 47.041702 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 74.588676 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 11.761053 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 10.725134 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 51.671406 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 9.93922 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 24.622116 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 11.438987 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 16.413824 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg7347, jg9093 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4298 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah025245 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g144300 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg42085, Sbi_jg48132 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27489 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00023483 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl04042, Sgl05780, Sgl09108 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000002217, gene:ENSEOMG00000002427 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6BG0013510 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30217820 |
| Apiaceae | Apium graveolens | 2 | Ag1G01656, Ag6G00582 |
| Arecaceae | Cocos nucifera | 3 | scaffold000092G000010, scaffold003798G000040 ... |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103706191, gene-LOC103715023 |
| Asteraceae | Flaveria trinervia | 4 | Ftri13G21325, Ftri5G02556, Ftri8G14401, Ftri9G24077 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G70740.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018598m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g25920.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB03g040590.2N, BniB03g048590.2N, BniB04g064830.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0861 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0931 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g08220 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g05420 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1319 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00027708, Pov_00027735 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G14397, Lb2G14935 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.1871, BH03.2044, CH03.2224 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0534800, gene-QOZ80_6BG0487990 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0479660.1 |
| Poaceae | Oryza coarctata | 2 | Oco17G004550, Oco18G004600 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g24330.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G179200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0705338 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr10G010340, Chr14G013580, Chr21G012750 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G342900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG033270, gene_TRIDC5BG035150 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G206700.1, TraesCS5B02G204900.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb099320_P001, Zm00001eb312330_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-20002, nbis-gene-30873 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30293, Zma_g32438 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.857, evm.TU.LG21.522 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g31340, gene.Posoc08g00140 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.213 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26437 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17538 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000001l.64, evm.TU.utg000001l.134 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004744 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11591 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2729 |
| Salicaceae | Populus euphratica | 3 | populus_peu07191, populus_peu21181, populus_peu21182 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132613864 |
| Solanaceae | Solanum chilense | 1 | SOLCI003965000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015749 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G2199 |
| Zosteraceae | Zostera marina | 1 | Zosma06g28220.v3.1 |