Basic Information
Locus ID:
Ag6G00526
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
elongator complex protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 17775279 | 17782530 | + | Ag6G00526 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 91,270.79 Da | 34.78 | 86.00 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 619 | 656 | 0.11 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 212 | 253 | 0.021 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 392 | 427 | 0.062 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 675 | 705 | 4.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 292 | 333 | 0.22 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 35 | 711 | 3.85E-39 | IPR011047 |
| SUPERFAMILY | SSF50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase | 672 | 822 | 4.87E-10 | IPR011044 |
| Gene3D | G3DSA:2.130.10.10 | - | 387 | 501 | 1.6E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 277 | 2.5E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 278 | 386 | 2.3E-13 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 663 | 823 | 3.5E-21 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 563 | 662 | 4.6E-12 | IPR015943 |
| SMART | SM00320 | WD40_4 | 571 | 610 | 3.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 102 | 144 | 0.73 | IPR001680 |
| SMART | SM00320 | WD40_4 | 391 | 428 | 0.42 | IPR001680 |
| SMART | SM00320 | WD40_4 | 667 | 706 | 1.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 344 | 383 | 400.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 712 | 756 | 16.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 441 | 482 | 250.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 45 | 95 | 0.017 | IPR001680 |
| SMART | SM00320 | WD40_4 | 285 | 334 | 0.24 | IPR001680 |
| SMART | SM00320 | WD40_4 | 206 | 253 | 0.0038 | IPR001680 |
| SMART | SM00320 | WD40_4 | 771 | 820 | 0.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 618 | 657 | 7.1E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 674 | 715 | 12.714052 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 674 | 711 | 9.678328 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 240 | 254 | 9.5E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 693 | 707 | 9.5E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 321 | 335 | 9.5E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G49540.1 | elongator protein 2. | 0 |
| RefSeq | XP_017236256.1 | PREDICTED: elongator complex protein 2 [Daucus carota subsp. sativus] | 0 |
| F4I1S7 | Elongator complex protein 2 OS=Arabidopsis thaliana OX=3702 GN=ELP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A161XHC4 | Elongator complex protein 2 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_007266 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 16.306257 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 7.388445 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 6.586489 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 7.807042 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 7.780613 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 8.030157 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 7.12109 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 5.513188 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 13.538447 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 15.405314 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 15.673627 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 14.194365 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 12.764211 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 12.161979 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 2.093104 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 2.889207 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 2.179504 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 4.454356 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 3.143075 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 4.542922 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 6.273585 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 5.074525 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 6.431508 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 6.643469 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 5.175977 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 5.738657 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 3.431173 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 4.644715 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 5.375559 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.243571 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.525455 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.182493 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 4.952508 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 5.592071 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 3.828067 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.213498 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.681567 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.521373 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 8.201932 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 4.298943 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.10262 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 9.304146 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 5.640123 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 5.868282 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 6.776167 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 8.706491 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 2.32596 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 8.742991 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 8.901646 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 5.636834 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg5217, jg5231 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4074 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah025578, Ah026006, Ah026010 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12863, Sbi_jg53008 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8851 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00027768 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33131, Sgl38383 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001994, gene:ENSEOMG00000002926 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0013230, CQ.Regalona.r1.6BG0014380 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30215110, pistato.v30215540 |
| Apiaceae | Apium graveolens | 1 | Ag6G00526 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G002220 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706798 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.1112.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G15124 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G49540.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10011237m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g36390.v2.2, Sp1g36410.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g061070.2N, BniB07g006270.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G2050 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G2242 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g01560 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0657s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g00800 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1495 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00019163, Pov_00040828 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G05770, Lb5G27517 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.1919, BH08.2010, CH08.2194 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0635580, gene-QOZ80_8BG0664380 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0021770.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_018631 |
| Poaceae | Oryza coarctata | 1 | Oco15G011920 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g38570.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G175600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403312 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr20G000360, Chr29G003100 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G184600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG015670, gene_TRIDC1BG016900 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G104700.1, TraesCS1B02G116100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb033820_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-47610 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g23184 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1898, evm.TU.LG14.188 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g02540 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.126 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-15623, nbisL1-mrna-2951 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17460 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000001l.75 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004689 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11647 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2808 |
| Salicaceae | Populus euphratica | 3 | populus_peu07105, populus_peu21078, populus_peu21079 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132605667, gene-LOC132606061 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107022021 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.16745_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G1425 |
| Zosteraceae | Zostera marina | 1 | Zosma01g11250.v3.1 |