Basic Information
Locus ID:
Ag6G00525
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 17684670 | 17687605 | + | Ag6G00525 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.78 | 77,969.89 Da | 40.04 | 98.31 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 409 | 707 | 1.45712E-93 | - |
| Pfam | PF00560 | Leucine Rich Repeat | 138 | 156 | 0.65 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 22 | 61 | 1.1E-13 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 409 | 700 | 4.0E-31 | IPR000719 |
| SUPERFAMILY | SSF52058 | L domain-like | 19 | 276 | 6.23E-47 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 408 | 705 | 3.1E-59 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 374 | 478 | 1.5E-19 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 479 | 712 | 2.8E-48 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 16 | 78 | 1.4E-8 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 79 | 282 | 8.0E-57 | IPR032675 |
| SMART | SM00220 | serkin_6 | 408 | 711 | 4.9E-16 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 403 | 711 | 30.944286 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 527 | 539 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01210.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_017231387.1 | PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Daucus carota subsp. sativus] | 0 |
| Q9ZU46 | Receptor protein kinase-like protein ZAR1 OS=Arabidopsis thaliana OX=3702 GN=ZAR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166EDQ5 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_007265 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.888115 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 3.015879 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 3.84419 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 4.247725 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 5.201615 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 6.498058 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 5.818611 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 5.506756 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 9.233256 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 9.209928 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 9.917013 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 7.372592 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 9.321139 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 5.992736 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.701557 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.276987 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 2.328483 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 2.625732 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 3.455839 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 3.552384 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 2.64077 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 6.163689 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 8.947532 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 8.214961 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 6.00749 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 5.624117 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 4.101547 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 3.977996 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 5.166435 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.39609 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.278777 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.176288 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 8.005785 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.855236 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 6.097206 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.635677 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.469503 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.965251 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 5.316346 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 2.857364 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.145056 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 2.730098 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 2.766038 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 7.248412 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 9.243308 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 2.712716 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 4.852102 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 5.692891 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 7.692795 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 9.605395 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg34964, jg7283, jg9127 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13903 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah025595 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12860, Sbi_jg53011 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8846 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017718 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl32803, Sgl38084 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000001533, gene:ENSEOMG00000024919 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0013150, CQ.Regalona.r1.6BG0014430 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30191140, pistato.v30215080, pistato.v30215570 |
| Apiaceae | Apium graveolens | 2 | Ag1G01585, Ag6G00525 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G008330, COCNU_06G008950 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103720961, gene-LOC103721560 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.3163.V1.1, AsparagusV1_05.846.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri8G06363, Ftri9G19454 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G25320.1, AT1G66830.1, AT2G01210.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10000800m.g.v1.0, Thhalv10006964m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g22910.v2.2, Sp2g12670.v2.2, Sp5g21800.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g064590.2N, BniB03g044070.2N, BniB04g041020.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq08G0700, Ceq09G2047 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl08G0689, Cgl09G2239, CglSG0027 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g01510 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g27520 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-2026, nbisL1-mrna-2027, nbisL1-mrna-2030 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1498 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00019181 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G22768, Lb6G32548 |
| Poaceae | Echinochloa crus-galli | 2 | BH02.1913, CH02.1925 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0034590, gene-QOZ80_1BG0084690 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0059000.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_052697 |
| Poaceae | Oryza coarctata | 1 | Oco01G011370 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g33090.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G273800 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr0G002730, Chr0G003340, Chr25G010000, Chr30G009820 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G398800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG036270, gene_TRIDC1BG041400 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G240300.1, TraesCS1B02G252400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb132610_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-52408 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g10545 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.118, evm.TU.LG09.1354 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g02500 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_15_RagTag.124, evm.TU.Scaffold_3_RagTag.1592 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-15438 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-15813, nbisL1-mrna-2954 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-17456, nbisL1-mrna-2800, nbisL1-mrna-414 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000019l.122, evm.TU.utg000001l.73 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00004698, Maker00006891 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-11649, nbisL1-mrna-13793, nbisL1-mrna-5375 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-12962, nbisL1-mrna-2810, nbisL1-mrna-3730 |
| Salicaceae | Populus euphratica | 4 | populus_peu07103, populus_peu09579, populus_peu21074 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132641691 |
| Solanaceae | Solanum chilense | 1 | SOLCI003849900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018484 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_912 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G1319 |