halophFGD

Basic Information

Locus ID: Ag6G00495

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: serine threonine-protein kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	16524275	16533066	-	Ag6G00495

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.31	92,795.59 Da	50.23	64.38	-1.17

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd14135	STKc_PRP4	476	792	0.0	IPR044092
Pfam	PF00069	Protein kinase domain	478	792	2.5E-44	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	464	793	3.78E-71	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	537	793	9.1E-72	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	447	536	2.6E-33	-
SMART	SM00220	serkin_6	477	792	1.8E-67	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	477	792	36.951237	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	604	616	-	IPR008271
MobiDBLite	mobidb-lite	consensus disorder prediction	1	60	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	308	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	341	375	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	68	308	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	341	363	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	394	421	-	-
Coils	Coil	Coil	339	359	-	-
Coils	Coil	Coil	155	189	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation) GO:0045292 (mRNA cis splicing, via spliceosome)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0004674 (protein serine/threonine kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K08827 (serine/threonine-protein kinase PRP4 [EC:2.7.11.1])

Best hit

Source	Best Hit ID	Description
TAIR	AT3G25840.2	Protein kinase superfamily protein.
RefSeq	XP_017234883.1	PREDICTED: serine/threonine-protein kinase prpf4B [Daucus carota subsp. sativus]
Swiss-Prot	Q13523	Serine/threonine-protein kinase PRP4 homolog OS=Homo sapiens OX=9606 GN=PRP4K PE=1 SV=3
TrEMBL	A0A166ECW5	non-specific serine/threonine protein kinase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_007234 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	21.773956	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	18.659273	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	16.511868	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	18.18084	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	18.763567	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	20.274881	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	20.985851	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	22.203979	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	23.781702	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	24.0109	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	26.376516	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	26.951855	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	28.185284	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	21.393951	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	10.701077	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	10.279063	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	12.630405	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	11.941648	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	10.408992	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	10.483631	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	12.951187	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	15.098398	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	14.518414	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	14.772454	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	13.440684	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	18.140865	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	13.998816	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	14.283073	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	14.327882	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	4.193449		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	6.104663		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	3.839672		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	8.290523		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	7.675248		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	8.649148		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	4.687027		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	3.903126		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	4.272591		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	8.753607	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	7.365278	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	7.899839	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	12.876534	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	12.670429	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	21.945763	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	20.138302	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	9.86007	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	21.233059	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	17.040846	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	24.12273	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	23.613596	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg34921, jg9170
Aizoaceae	Mesembryanthemum crystallinum	2	gene_24403, gene_3994
Amaranthaceae	Atriplex hortensis	1	Ah025858
Amaranthaceae	Beta vulgaris	1	BVRB_6g142180
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg13811, Sbi_jg52114
Amaranthaceae	Salicornia europaea	1	Seu_jg9732
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00018876
Amaranthaceae	Suaeda glauca	2	Sgl34165, Sgl39796
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000000812, gene:ENSEOMG00000000895 ... gene:ENSEOMG00000002398, gene:ENSEOMG00000025638
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.6AG0014830, CQ.Regalona.r1.6BG0015640
Anacardiaceae	Pistacia vera	2	pistato.v30223410, pistato.v30225530
Apiaceae	Apium graveolens	2	Ag6G00495, Ag8G02052
Arecaceae	Cocos nucifera	2	COCNU_02G005120, COCNU_03G010120
Arecaceae	Phoenix dactylifera	2	gene-LOC103695498, gene-LOC103700973
Asparagaceae	Asparagus officinalis	2	AsparagusV1_06.1520.V1.1, AsparagusV1_08.2886.V1.1
Asteraceae	Flaveria trinervia	1	Ftri9G06048
Brassicaceae	Arabidopsis thaliana	3	AT1G13350.2, AT3G25840.1, AT3G53640.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10003622m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp2g15070.v2.2
Brassicaceae	Brassica nigra	2	BniB02g066460.2N, BniB04g013650.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq03G2056
Casuarinaceae	Casuarina glauca	1	Cgl03G2194
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno13g01930, gene.Cymno17g04920
Dunaliellaceae	Dunaliella salina	1	Dusal.0999s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate01g18470
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG03.530
Plantaginaceae	Plantago ovata	2	Pov_00027452, Pov_00039566
Plumbaginaceae	Limonium bicolor	1	Lb1G01554
Poaceae	Echinochloa crus-galli	5	AH05.4248, AH08.1004, BH05.4346, CH05.4576, CH08.1328
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_3AG0219280, gene-QOZ80_3BG0264540 ... gene-QOZ80_5AG0399870, gene-QOZ80_5BG0448560
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.4HG0337020.1, HORVU.MOREX.r3.5HG0419470.1
Poaceae	Lolium multiflorum	4	gene-QYE76_000295, gene-QYE76_062451, gene-QYE76_062456 ... gene-QYE76_062829
Poaceae	Oryza coarctata	3	Oco05G021510, Oco23G011480, Oco24G011300
Poaceae	Oryza sativa	1	LOC_Os12g44330.1
Poaceae	Paspalum vaginatum	1	gene-BS78_08G172700
Poaceae	Sporobolus alterniflorus	5	Chr04G020200, Chr06G021180, Chr19G006870, Chr20G007800 ... Chr27G010050
Poaceae	Thinopyrum elongatum	2	Tel4E01G081100, Tel5E01G000800
Poaceae	Triticum dicoccoides	3	gene_TRIDC4BG007020, gene_TRIDC5AG000690 ... gene_TRIDC5BG000180
Poaceae	Triticum aestivum	7	TraesCS4A02G269100.1, TraesCS4B02G044900.1 ... TraesCS4D02G044600.1, TraesCS4D02G044900.2, TraesCS5A02G000100.1, TraesCS5B02G001400.1, TraesCS5D02G000600.1
Poaceae	Zea mays	2	Zm00001eb033230_P002, Zm00001eb133880_P001
Poaceae	Zoysia macrostachya	1	Zma_g26220
Portulacaceae	Portulaca oleracea	2	evm.TU.LG13.653, evm.TU.LG21.340
Posidoniaceae	Posidonia oceanica	1	gene.Posoc10g04300
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_17_RagTag.923
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-23649
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-5972
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-21938
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000013l.516
Rhizophoraceae	Kandelia obovata	1	Maker00004345
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-10908
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-23137
Salicaceae	Populus euphratica	3	populus_peu07050, populus_peu21014, populus_peu30998
Solanaceae	Lycium barbarum	3	gene-LOC132606093, gene-LOC132607627, gene-LOC132641794
Solanaceae	Solanum chilense	1	SOLCI003188400
Solanaceae	Solanum pennellii	2	gene-LOC107020321, gene-LOC107021947
Tamaricaceae	Reaumuria soongarica	1	gene_10230
Tamaricaceae	Tamarix chinensis	2	TC01G2150, TC04G0215
Zosteraceae	Zostera marina	1	Zosma05g19200.v3.1